Publications

2015 Publications attributed to the ARC Centre of Excellence in Plant Cell Walls

Aditya J, Lewis J, Shirley NJ, Tan H-T, Henderson M, Fincher GB, Burton RA, Mather DE and Tucker MR (2015) The dynamics of cereal cyst nematode infection differ between susceptible and resistant barley cultivars and lead to changes in (1,3;1,4)-β-glucan levels and HvCslF gene transcript abundance . New Phytologist 207, 135-147.

Azadi M, Nguyen AV, & Yakubov GE (2015). Attractive Forces between Hydrophobic Solid Surfaces Measured by AFM on the First Approach in Salt Solutions and in the Presence of Dissolved Gases. Langmuir, 31(6), 1941-1949.

Betts NS, Fox GP, Kelly AM, Cruickshank AW, Lahnstein J, Henderson M, Jordan DR and Burton RA. (2015) Non-cellulosic cell wall polysaccharides are subject to genotype × environment effects in sorghum (Sorghum bicolor) grain. Journal of Cereal Science 63, 64-71.

Bonilla MR, Lopez-Sanchez P, Gidley MJ and Stokes JR (2016) Micromechanical model of biphasic biomaterials with internal adhesion: Application to nanocellulose hydrogel composites. Acta biomaterialia, 29, pp.149-160.

Boughton BA, Thinagaran D, Sarabia D, Bacic A, Roessner U (2015) Mass Spectrometry Imaging for Plant Biology: A Review, Phytochemistry Reviews, 1-44.

Corbin KR, Byrt CS, Bauer S, DeBolt S, Chambers D, Holtum JAM, Karem G, Henderson M, Lahnstein J, Beahan CT, Bacic A, Fincher GB, Betts NS and Burton R (2015) Prospecting for energy-rich renewable raw materials: Agave leaf case study. PloS ONE 10(8), e0135382.

Corbin KR, Hsieh YSY, Betts NS, Byrt CS, Henderson M, Stork J, DeBolt S, Fincher GB and Burton RA (2015) Grape marc as a source of carbohydrates for bioethanol: chemical composition, pre-treatment and saccharification. Bioresource Technology 193, 76-83.

Cu S, Collins HM, Betts NS, March TJ, Janusz A, Stewart DC, Skadhauge B, Eglinton J, Kyriacou B, Little A, Burton RA and Fincher GB, (2015) Water uptake in barley grain: physiology, genetics and industrial applications. Plant Science

Dhital S, Gidley MJ, & Warren FJ. (2015). Inhibition of α-amylase activity by cellulose: Kinetic analysis and nutritional implications. Carbohydrate Polymers, 123, 305-312.

Dhital S, Warren FJ, Butterworth PJ, Ellis PR, & Gidley MJ (2015). Mechanisms of Starch Digestion by α-amylase–structural Basis for Kinetic Properties. Critical Reviews in Food Science and Nutrition. doi:10.1080/10408398.2014.922043.

Draeger C, Ndinyanka Fabrice T, Gineau E, Mouille G, Kuhn BM, Moller I, Abdou MT, Frey B, Pauly M, Bacic A, Ringli C. (2015) Arabidopsis leucine-rich repeat extensin (LRX) proteins modify cell wall composition and influence plant growth. BMC Plant Biology 15.1 155.

Emanuelle S, Doblin MS, Stapleton DI, Bacic A, Gooley PR (2015) Molecular Insights into the Enigmatic Metabolic Regulator, SnRK1. Trends in Plant Science, 10.1016/j.tplants.2015.11.001.

Emanuelle S, Hossain MI, Moller IE, Pedersen HL, van de Meene AM, Doblin MS, Koay A, Oakhill JS, Scott JW, Willats WG, Kemp BE, Bacic A, Gooley PR, Stapleton DI., (2015) SnRK1 from Arabidopsis thalianais an atypical AMPK. Plant Journal 82 (2) 183-192.

Endler A, Kesten C, Schneider R, Zhang Y, Ivakov A, Froehlich A, Funke N, Persson S. A Mechanism for Sustained Cellulose Synthesis during Salt Stress. Cell. 2015 Sep 10;162(6):1353-64.

Ermawar RA, Collins HM, Byrt CS, Betts NS, Henderson M, Shirley NJ, Schwerdt J, Lahnstein J, Fincher GB and Burton RA (2015) Distribution, structure and biosynthetic gene families of (1,3;1,4)-beta-glucan in Sorghum bicolor (L.) Moench. Journal of Integrative Plant Biology 57, 429-445.

Ermawar RA, Collins HM, Byrt CS, Henderson M, O'Donovan LA, Shirley NJ, Schwerdt J, Lahnstein J, Fincher GB and Burton RA (2015) Genetics and physiology of cell wall polysaccharides in the model C4 grass, Setaria viridis spp. BMC Plant Biology 15, 236.

Flanagan BM, Gidley MJ, & Warren FJ (2015). Rapid quantification of starch molecular order through multivariate modelling of 13 C CP/MAS NMR spectra. Chemical Communications, 51(80), 14856-14858.

Ford KL, Zeng W, Heazlewood JL and Bacic A (2015) Characterization of protein N-glycosylation by tandem mass spectrometry using complementary fragmentation techniques, Front. Plant Sci, 6, 674.

Galletti R, Johnson K, Scofield S, San-Bento R, Watt AM, Murray J and Ingram G (2015) Defective Kernel 1 protein promotes and maintains plant epidermal differentiation. Development 142(11), 1978-1983.

Gibbins HL, Proctor GB, Yakubov GE, Wilson S, & Carpenter GH (2015). SIgA Binding to Mucosal Surfaces Is Mediated by Mucin-Mucin Interactions. PLOS ONE, 10(3), e0119677.

Gilbert,MS, Pantophlet AJ, Berends H, Pluschke AM, van den Borne JJ, Hendriks WH, ... & Gerrits, W. J. (2015). Fermentation in the Small Intestine Contributes Substantially to Intestinal Starch Disappearance in Calves. The Journal of nutrition, jn208595.

Gornik SG, Marsa F, Cassin A, MacRae JI, Ramaprasad A, Rchiad Z, McConville MJ, Bacic A, McFadden GI, Pain A, Waller RF, (2015) Endosymbiosis undone: stepwise elimination of the plastid in the dinoflagellate Hematodinium sp. PNAS 112(18) 5767-5772.

Herve C, Simeon A, Jam M, Cassin A, Johnson KL, Salmean AA, Willats WGT, Doblin MS, Bacic A, Kloareg B (2015) Arabinogalactan proteins have deep roots in eukaryotes: identification of genes and epitopes in brown algae and their role in Fucus serratus embryo development. , New Phytologist, 10.1111/nph.13786.

Hill CB, Taylor JD, Edwards J, Mather D, Langridge P, Bacic A, Roessner U, (2015) Detection of QTL for metabolic and agronomic traits in wheat with adjustments for variation at genetic loci that affect plant phenology. Plant Science 233, 143-154.

Houston K, Burton RA, Sznajder B, Rafalski AJ, Dhugga KS, Mather DE, Taylor J, Steffenson BJ, Waugh R and Fincher GB (2015) A genome-wide association study for culm cellulose content in barley reveals candidate genes co-expressed with members of the CELLULOSE SYNTHASE A gene family. PLOS ONE (10.1371/journal.pone.0130890).

Hsieh YS, Zhang Q, Yap K, Shirley NJ, Lahnstein J, Nelson CJ, Burton RA, Millar AH, Bulone V and Fincher GB, 2015. The Genetics, Transcriptional Profiles and Catalytic Properties of the UDP-Arabinose Mutase Family from Barley. Biochemistry.

Johnson KL, Ramm S, Kappel C, Ward S, Levser O, Sakamoto T, Kurata T, Bevan MW, Lenhard M (2015) The tinkerbell (Tink) mutation identifies the dual-specificty MAPK phosphatase INDOLE-3-BUTYRIC ACID-RESPONSES (IBR5) as a novel regulator of organ size in Arabidopsis, PloS ONE, 10(7):e0131103

Karp A, Artaxo Netto PE, Berndes G, Cantarella H, El-Lakany H, Moellwald Duque Estrada TE, Faaij A, Fincher GB, Huntley BJ, Ravindranath NH, Van Sluys M-A, Verdade LM, Youngs H (2015) Bioenergy and Sustainability: Bridging the Gaps (Ed. Souza GM, Victoria RL, Joly CA, Verdade LM) Chapter 5 Environmental and Climate Security, pp 138-183.

Lin D, Lopez-Sanchez P and Gidley MJ, (2015). Binding of arabinan or galactan during cellulose synthesis is extensive and reversible. Carbohydrate Polymers, 126, pp.108-121.

Lopez-Sanchez P, Cersosimo J, Wang D, Flanagan B, Stokes JR, & Gidley MJ (2014). Poroelastic Mechanical Effects of Hemicelluloses on Cellulosic Hydrogels under Compression. PloS ONE, 10(3), e0122132-e0122132.

Lopez-Sanchez P, Schuster E, Wang D, Gidley MJ, & Strom A (2015). Diffusion of macromolecules in self-assembled cellulose/hemicellulose hydrogels. Soft Matter, 11(20), 4002-4010.

Low DY, Williams BA, D'Arcy BR, Flanagan BM, Gidley MJ. (2015) In vitro fermentation of chewed mango and banana: particle size, starch and vascular fibre effects. Food & Function 6(8), 2464-2474.

Low, DY, D'Arcy, B, Gidley, MJ. (2015) Mastication effects on carotenoid bioaccessibility from mango fruit tissue, Food Research International (2015). 67, 238-246.

Malone JM, Morran S, Shirley N, Boutsalis P and Preston C. (2015) EPSPS gene amplification in glyphosate-resistant Bromus diandrus. Pest Management Science 10.1002/ps.4019.

Marcotuli I, Houston K, Waugh R, Fincher GB, Burton RA, Blanco A and Gadaleta A (2015) Genome wide association mapping for arabinoxylan content in a collection of tetraploid wheats. PloS ONE. (10.1371/journal.pone.0132787).

Martínez-Sanz M, Gidley MJ, & Gilbert EP (2015). Application of X-ray and neutron small angle scattering techniques to study the hierarchical structure of plant cell walls: A review. Carbohydrate Polymers, 125, 120-134.

Martínez-Sanz M, Lopez-Sanchez P, Gidley MJ, & Gilbert EP (2015). Evidence for differential interaction mechanism of plant cell wall matrix polysaccharides in hierarchically-structured bacterial cellulose. Cellulose, 1-23.

Mikkelsen D, Flanagan BM, Wilson SM, Bacic A, & Gidley MJ (2015). Interactions of arabinoxylan and (1, 3)(1, 4)-β-glucan with cellulose networks. Biomacromolecules, 16(4), 1232-1239.

Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, Ye Z, Miao C, Lin Z, Wang H, Zhou H, Yim WC, Priest HD, Zheng C, Woodhouse M, Edger PP, Guyot R, Guo HB, Guo H, Zheng G, Singh R, Sharma A, Min X, Zheng Y, Lee H, Gurtowski J, Sedlazeck FJ, Harkess A, McKain MR, Liao Z, Fang J, Liu J, Zhang X, Zhang Q, Hu W, Qin Y, Wang K, Chen L-Y, Shirley N, Lin Y-R, Liu L-Y, Hernandez AG, Wright CL, Bulone V, Tuskan GA, Heath K, Zee F, Moore PH, Sunkar R, Leebens-Mack JH, Mockler T, Bennetzen JL, Freeling M, Sankoff D, Paterson AH, Zhu X, Yang X, Smith JAC, Cushman JC, Paull RE & Yu Q; (2015) The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics 47, 1435-1442.

Mok L, Wynne JW, Ford K, Shiell B, Bacic A, Michalski WP. (2015) Proteomic analysis of Pteropus alecto kidney cells in response to the viral mimic, Poly I: C. Proteome Science. 2015 Nov 2;13(1):1.

Mönch S, Netzel M, Netzel G, Ott U, Frank T, & Rychlik M (2015). Folate bioavailability from foods rich in folates assessed in a short term human study using stable isotope dilution assays. Food & Function, 6(1), 241-247.

Oehme D, Downton M, Doblin MS, Wagner J, Gidley MJ, Bacic A (2015) Gaining insight into cell wall cellulose macrofibril organisation by simulating microfibril adsorption, Cellulose, 22(6), 3501-3520.

Oehme DP, Downton MT, Doblin MS, Wagner J, Gidley MJ, Bacic A (2015) Unique aspects of the structure and dynamics of elementary iβ cellulose microfibrils revealed by computational simulations. Plant Physiology 168 (1) 3-17.

Padayachee A, Day L, Howell K, & Gidley MJ (2015). Complexity and Health Functionality of Plant Cell Wall Fibres from Fruits and Vegetables. Critical Reviews in Food Science and Nutrition, (just-accepted), 00-00. doi:10.1080/10408398.2013.850652.

Phan ADT, Netzel G, Wang D, Flanagan BM, D’Arcy BR & Gidley MJ (2015). Binding of dietary polyphenols to cellulose: Structural and nutritional aspects. Food Chemistry, 172, 388-396.

Pyke J, Callahan D, Kanokia K, Bowne, J, Sahani S, Tull D, Bacic A, McConville MJ, Roessner U (2015) A tandem liquid chromatography–mass spectrometry (LC–MS) method for profiling small molecules in complex samples. Metabolomics: 1-11.

Schwerdt JG, MacKenzie K, Wright F, Oehme D, Wagner JM, Harvey AJ, Shirley NJ, Burton RA, Schreiber M, Halpin C, Zimmer J, Marshall DF, Waugh R and Fincher GB (2015) Evolutionary dynamics of the cellulose synthase gene superfamily in grasses. Plant Physiology pp-00140.

Shelat KJ, Nicholson T, Flanagan BM, Zhang D, Williams BA, Gidley MJ (2015) “Rheology and microstructure characterisation of small intestinal digesta from pigs fed a red meat- containing Western-style diet” Food Hydrocolloids, 2015, 44: 300-308.

Song L, Zeng W, Wu A, Picard K, Lampugnani ER, Cheetamun R, Beahan C, Cassin A, Lonsdale A, Doblin MS, Bacic A, (2015) Asparagus spears as a model to study heteroxylan biosynthesis during secondary wall development. PloS ONE 10 (4) e0123878.

Tan H-T, Shirley NJ, Singh RR, Henderson M, Dhugga KS, Mayo GM, Fincher GB and Burton RA (2015) Powerful regulatory systems and post-transcriptional gene silencing resist increases in cellulose content in cell walls of barley. BMC Plant Biology 15, 62.

Tiong J, Mcdonald G, Genc Y, Shirley N, Langridge P and Huang CY (2015) Increased expression of six ZIP family genes by zinc (Zn) deficiency is associated with enhanced uptake and root-to-shoot translocation of Zn in barley (Hordeum vulgare). New Phytologist 207, 1097-1109.

Uboldi AD, McCoy JM, Blume M, Gerlic M, Ferguson DJ, Dagley LF, Beahan CT, Stapleton DI, Gooley PR, Bacic A, Masters SL. (2015) Regulation of Starch Stores by a Ca 2+-Dependent Protein Kinase Is Essential for Viable Cyst Development in Toxoplasma gondii. Cell Host & Microbe. 2015 Dec 9; 18(6):670-81.

Wang D, Ho L, Faith J, Ono K, Janle EM, Lachcik PJ, Cooper BR, Jannasch AH, D’Arcy BR, Williams BA, Ferruzzi MG, Levine S, Zhao W, Dubner L, & Pasinetti, G. M. (2015). Role of intestinal microbiota in the generation of polyphenol‐derived phenolic acid mediated attenuation of Alzheimer's disease β‐amyloid oligomerization. Molecular Nutrition & Food Research. Vol. 59, pp. 1025–1040.

Warren FJ, Zhang B, Waltzer G, Gidley MJ, & Dhital, S (2015). The interplay of α-amylase and amyloglucosidase activities on the digestion of starch in in vitro enzymic systems. Carbohydrate Polymers, 117, 192-200.

Wijetunge CD, Saeed I, Boughton BA, Spraggins JM, Caprioli RM, Bacic A, Roessner U, Halgamuge SK. (2015) EXIMS: an improved data analysis pipeline based on a new peak picking method for EXploring Imaging Mass Spectrometry data. Bioinformatics: btv356.

Williams BA, Zhang D, Lisle AT, Mikkelsen D, McSweeney CS, Kang S, Bryden WL & Gidley MJ (2015). Soluble arabinoxylan enhances large intestinal microbial health biomarkers in pigs fed a red meat–containing diet. Nutrition.

Wilson SM, Ho YY, Lampugnani ER,Van de Meene AML, Bain MP, Bacic A, Doblin MS , (2015) Determining the subcellular location of (1,3; 1,4)-β-D-glucan synthesis and assembly. Plant Cell 27(3) 754-771.

Wong SC, Shirley NJ, Little A, Khoo KHP, Schwerdt J, Fincher GB, Burton RA and Mather DE (2015) Differential expression of the HvCslF6 gene late in grain development may explain quantitative differences in (1,3;1,4)-β-glucan concentration in barley. Molecular Breeding, 35(1), 1-12.

Würschum, T., Tucker, M. R., Maurer, H. P., & Leiser, W. L. (2015). Ethylene inhibitors improve efficiency of microspore embryogenesis in hexaploid triticale. Plant Cell, Tissue and Organ Culture (PCTOC), 122(3), 751-757.

Yakubov GE, Branfiled T, Bongaerts J, Stokes JR (2015) Tribology of particle suspensions in soft rolling-sliding contacts. Biotribology, 3, 1-10.

Yakubov GE, Macakova L, Wilson S, Windust JH & Stokes JR (2015). Aqueous lubrication by fractionated salivary proteins: Synergistic interaction of mucin polymer brush with low molecular weight macromolecules. Tribology Internationaldoi: 10.1016/j.triboint.2014.12.025.

Yakubov GE, Zhong l, Li M, Boehm MW, Xie F, Beattie DA, Halley PJ, and Stokes JR. (2015) Lubrication of starch in Ionic liquid-water mixtures: soluble carbohydrate polymers form a boundary film on hydrophobic surfaces. Carbohydrate Polymers 133 (2015): 507-516.

Yamassaki FT, Lenzi RM, Campestrini LH, Bovo F, Seyfried M, Soldera-Silva A, Stevan-Hancke FR, Zawadzki-Baggio SF, Pettolino FA, Bacic A, Maurer JB, (2015) Effect of the native polysaccharide of cashew-nut tree gum exudate on murine peritoneal macrophage modulatory activities . Carbohydrate Polymers 125, 241-248.

Yu L, Xue C, Chang Y, Hu Y, Xu X, Ge L, & Liu G (2015). Structure and rheological characteristics of fucoidan from sea cucumber Apostichopus japonicus. Food Chemistry, 180, 71-76.

Zhang B, Dhital S, & Gidley M J (2015). Densely packed matrices as rate determining features in starch hydrolysis. Trends in Food Science & Technology, 43(1), 18-31.

Zhang B, Dhital S, Flanagan BM, Luckman P, Halley PJ, & Gidley MJ (2015). Extrusion induced low-order starch matrices: Enzymic hydrolysis and structure. Carbohydrate Polymers, 134, 485-496.

Zhang D, Williams B, Mikkelsen D, Li X, Keates HL, Lisle AT, Collins HM, Fincher GB, Bird AR, Topping DL, Gidley MJ, Bryden WL (2014) Soluble arabinoxylan alters digesta flow and protein digestion of red meat-containing diets in pigs. Nutrition, doi:10.1016/j.nut.2015.03.006.

2015 Publications authored or co-authored by ARC CoE PCW personnel not attributed to the CoE

Dhital S, Dabit L, Zhang B, Flanagan B, & Shrestha AK (2015). In vitro digestibility and physicochemical properties of milled rice. Food Chemistry, 172, 757-765.

Heazlewood JL, Schrimpf SP, Becher D, Reidel K, Tholey A, Bendixen E   2015 Multi-Organism Proteomes (iMOP): Advancing our understanding of human biology. Proteomics 15: 2885-2894.

Lao J, Sharma M, Sharma R, González Fernández-Niño SM, Schmutz J, Ronald PC, Heazlewood JL, Schwessinger B (2015). Proteome profile of the endomembrane of developing coleoptiles from switchgrass (Panicum virgatum). Proteomics 15: 2286-2290.

Luo Y, Scholl S, Doering A, Zhang Y, Irani NG, Rubbo SD, Neumetzler L, Krishnamoorthy P, Van Houtte I, Mylle E, Bischoff V, Vernhettes S,  Winne J, Friml J, Stierhof YD, Schumacher K, Persson S and Russinova E  (2015) V-ATPase activity in the TGN/EE is required for exocytosis and recycling in Arabidopsis.  Nature Plants 1, no. 7 (2015).

Mok L, Wynne JW, Grimley S, Shiell B, Green D, Monaghan P, Pallister J, Bacic A, Michalski WP, (2015) Mouse Fibroblast L929 cells are less permissive to infection by Nelson Bay virus compared to other mammalian cell line.  Journal of General Virology

Mönch S, Netzel M, Netzel G, Ott U, Frank T, & Rychlik M (2015). Folate bioavailability from foods rich in folates assessed in a short term human study using stable isotope dilution assays. Food & Function, 6(1), 241-247.         

Pathan M, Keerthikumar S, Ang CS, Gangoda L, Quek CY, Williamson NA, Mouradov D, Sieber OM, Simpson RJ, Salim A, Bacic A, Hill A, Stroud DA, Ryan MT, Agbinya JI, Mariadasson JM, Burgess AW, Mathivanan S., (2015) Funrich: An open access standalone functional enrichment and interaction network analysis tool.  Proteomics.

Schneider R, Persson S. (2015) Another brick in the wall. Science 350: 156-7.

Schneider R, Persson S. (2015) Connecting two arrays: the emerging role of actin-microtubule cross-linking motor proteins. PLoS Pathogens 11:e1004800.      

Shrestha AK, Blazek J, Flanagan BM, Dhital S, Larroque O, Morell MK, Gilbert EP & Gidley MJ (2015). Molecular, mesoscopic and microscopic structure evolution during amylase digestion of extruded maize and high amylose maize starches. Carbohydrate Polymers.

Van Sluyter SC, McRae J, Falconer R, Smith PA, Bacic A, Waters EJ, Marangon M , (2015) Wine protein haze: mechanisms of formation and advances in prevention.  J. Agric. Food Chem  63 (16) 4020-40430.

Würschum T, Tucker MR, Maurer HP, & Leiser WL (2015). Ethylene inhibitors improve efficiency of microspore embryogenesis in hexaploid triticale. Plant Cell, Tissue and Organ Culture (PCTOC), 122(3), 751-757.

Zhang Y, Persson S, Hirst J, Robinson MS, van Damme D, Sánchez-Rodríguez C. 2015       Change your Tplate, change your fate: CME in plants and beyond. Trends Plant Sci. 20:41.

 

2014 Publications attributed to the ARC Centre of Excellence in Plant Cell Walls

Athman A, Tanz S K, Conn VM, Jordans C, Mayo, GM, Ng WW, Burton RA, Conn SJ, and Gilliham M (2014) Protocol: a fast and simple in situ PCR method for localising gene expression in plant tissue. Plant Methods 10, no. 1 (2014): 1-20

Boehm MW, Baier SK and Stokes JR (2013) Capturing changes in structure and rheology of an oily brittle snack food during in vitro oral processing. Food Research International 54 (1) 544-551

Bonilla MR, Stokes JR, Gidley MJ and Yakubov GE (2014) Interpreting Atomic Force Microscopy nanoindentation of hierarchical biological materials using multi-regime analysis. Soft Matter 11(7):1281-1292, doi: 10.1039/C4SM02440K

Burton RA and Fincher GB (2014) Evolution and Development of Cell Walls in Cereal Grains. Frontiers In Plant Science 5:456, doi: 10.3389/fpls.2014.00456

Burton RA and Fincher GB (2014) Plant cell wall engineering: applications in biofuel production and improved human health. Current Opinions Biotechnology 26:79-84

Chowdhury J, Henderson M, Schweizer P, Burton RA, Fincher GB and Little A (2014) Differential accumulation of callose, arabinoxylan and cellulose in nonpenetrated versus penetrated papillae on leaves of barley infected with Blumeria graminis f. sp. Hordei. New Phytologist 204: 650-660, doi: 10.1111/nph.12974

Comino P, Collins H, Lahnstein J, Beahan C and Gidley MJ (2014) Characterisation of soluble and insoluble cell wall fractions from rye, wheat and hull-less barley endosperm flours. Food Hydrocolloids 41:219-226

Coombe DR, Davis C, Fincher GB, McConville MJ, Packer N, Stubbs KA, Williams SJ and Dell A (2014) Letter to the Glycoforum: Transforming Glycoscience: An Australian Perspective. Glycobiology 24:1-3

Dhital S, Butardo VM, Jobling SA and Gidley MJ (2014) Rice starch granule amylolysis - differentiating effects of particle size, morphology, thermal properties and crystalline polymorph. Carbohydrate Polymers 115:305-16, doi: dx.doi.org/10.1016/j.carbpol.2014.08.091

Dhital S, Dolan G, Stokes JR and Gidley MJ (2014) Enzymatic hydrolysis of starch in the presence of cereal soluble fibre polysaccharides. Food and Function 5(3): 579-586

Dhital S, Warren FJ, Gidley, Butterworth, PJ, Ellis PR and Gidley, MJ (2014) Mechanisms of starch digestion by α-amylase–structural basis for kinetic properties. Critical Reviews in Food Science and Nutrition, doi: 10.1080/10408390.2014.922043

Dhital S, Warren FJ, Zhang B and Gidley MJ (2014) Amylase binding to starch granules under hydrolysing and non-hydrolysing conditions. Carbohydrate Polymers 113:97-107

Doblin MS, Johnson KL, Humphries J, Newbigin EJ and Bacic A (2014) Are designer plant cell walls a realistic aspiration or will the plasticity of the plant's metabolism win out? Current Opinion in Biotechnology 26:108-114

Foroughi S, Baker AJ, Roessner U, Johnson AA, Bacic A, and Callahan DL (2014) Hyperaccumulation of zinc by Noccaea caerulescens results in a cascade of stress responses and changes in the elemental profile. Metallomics 6(9):1671-1682

Houston K, Russell J, Washington J, Burton RA, Fincher GB and Waugh R (2014) A genome wide association scan for (1, 3; 1, 4)-ß-glucan content in the grain of contemporary 2-row Spring and Winter barleys. BMC Genomics 15(1):907, doi: 10.1186/1471-2164-15-907

Lee JE, Lampugnani ER, Bacic A and Golz JF (2014) SEUSS and SEUSS-LIKE 2 coordinate auxin distribution and KNOXI activity during embryogenesis. The Plant Journal 80(1):122-135, doi: 10.1111/tpj.12625

Li E, Dhital S and Hasjim J (2014) Effects of grain milling on starch structures and flour/starch properties. Starch-Stärke 66(1-2):15-27

Li L, Huang J, Qin L, Huang Y, Zeng W, Rao Y, Li J, Li X and Xu WL (2014) Two cotton fiber-associated glycosyltransferases, GhGT43A1 and GhGT43C1, function in hemicellulose glucuronoxylan biosynthesis during plant development. Physiologia Plantarum 152(2):367-79, doi: 10.1111/ppl.12190

Li M, Lopato S, Hrmova M, Pickering M, Shirley N, Koltunow AM and Langridge P (2014) Expression patterns and protein structure of a lipid transfer protein END1 from Arabidopsis. Planta 240(6):1319-34, doi:10.1007/s00425-014-2155-6

Liu W, Maurer HP, Li G, Tucker MR, Gowda M, Weissmann EA, Hahn V and Würschum T (2014) Genetic architecture of winter hardiness and frost tolerance in triticale. PLoS One 9(6):e99848, doi: 10.1371/journal.pone.0099848

Lopez-Sanchez P, Rincon Bonilla M, Wang D, Brulhart S, Stokes J and Gidley M (2014) Micromechanics and poroelasticity of hydrated cellulose networks. Biomacromolecules 15:2274−2284

Lorbeer AJ, Lahnstein J, Fincher GB, Su P and Zhang W (2014) Kinetics of conventional and microwave-assisted fucoidan extractions from the brown alga, Ecklonia radiatea. Journal of Applied Phycology doi: 10.1007/s10811-014-0446-8

Lowe RG, Cassin A, Grandaubert J, Clark BL, Van de Wouw AP, Rouxel T and Howlett BJ (2014) Genomes and Transcriptomes of Partners in Plant-Fungal- Interactions between Canola (Brassica napus) and Two Leptosphaeria Species. PLoS One 9(7): e103098

Martin AP, Palmer W, Byrt CS, Furbank RT and Grof CPL (2013) A holistic high-throughput screening framework for biofuel feedstock assessment that characterises variations in soluble sugars and cell wall composition in Sorghum bicolor. Biotechnology for biofuels 6(1):186, doi: 10.1186/1754-6834-6-186

Mikkelsen MD, Harholt J, Ulvskov P, Johansen IE, Fangel JU, Doblin MS, Bacic A and Willats WGT (2014) Evidence for land plant cell wall biosynthetic mechanisms in charophyte green algae. Annals of Botany 114(6):1217-36, doi:10.1093/aob/mcu171

Paulsen BS, Craik DJ, Dunstan DE, Stone BA and Bacic A (2014) The Yariv reagent: behavior in different solvents and interaction with a gum arabic Arabinogalactan-protein. Carbohydrate Polymers 106:460-468, doi: 10.1016/j.carbpol.2014.01.009) 

Ratnayake S, Beahan CT, Callahan DL and Bacic A (2014) The reducing end sequence of wheat endosperm cell wall arabinoxylans. Carbohydrate Research 11:23-32

Schreiber M, Wright F, MacKenzie K, Hedley PE, Schwerdt JG, Little A, Burton RA, Fincher GB, Marshall D, Waugh R and Halpin C (2014) The barley genome sequence assembly reveals three additional members of the CslF (1,3;1,4)-ß-Glucan Synthase Gene Family. PloS One 9(3):e90888, doi: 10.1371/journal.pone.0090888

Selway N and Stokes JR (2014) Soft material deformation, flow, and lubrication between compliant substrates: Impact on flow, behavior, mouthfeel, stability, and flavor. Annual Review of Food Science and Technology 5:373-393

Trafford K and Fincher GB (2014) Barley Grain Carbohydrates: Starch and Cell Walls. In: Barley Chemistry and Technology, 2nd Edition, PR Shewry and S Ullrich (editors), AACC Monograph Series, pp 71-95

Tucker MR & Koltunow AM (2014) Traffic monitors at the cell periphery: the role of cell walls during early female reproductive cell differentiation in plants. Current Opinion in Plant Biology 17:137-145

Warren FJ, Waltzer G, Zhang B, Gidley MJ and Dhital S (2014) The interplay of α-amylase and amyloglucosidase activities on the digestion of starch in in vitro enzymic systems. Carbohydrate Polymers 6:117:192-200, doi: 10.1016/j.carbpol.2014.09.043

Yakubov GE, Macakova L, Wilson S, Windust JHC and Stokes JR (2014) Aqueous lubrication by fractionated salivary proteins: Synergistic interaction of mucin polymer brush with low molecular weight macromolecules, Tribology International, doi: 10.1016/j.triboint.2014.12.025 

Yakubov GE (2014) Lubrication. In: Saliva: secretion and functions, Antoon JM, Ligtenberg and Enno CI Veerman (editors), Basel, Switzerland: S. Karger, pp. 71-87

Yakubov GE, Gibbins H, Proctor GB and Carpenter GH (2014) Oral mucosa: physiological and physicochemical aspects. In: Mucoadhesive Materials and Drug Delivery Systems, Vitaliy V. Khutoryanskiy (editors), Chichester, West Sussex, UK: John Wiley & Sons, pp. 3-37

Yakubov, GE., Singleton, Scott and Williamson, A (2014). Methods for assessing mucoadhesion: the experience of an integrative approach. In: Mucoadhesive Materials and Drug Delivery Systems, Vitaliy V. Khutoryanskiy (editors), Chichester, West Sussex, UK: John Wiley & Sons, pp. 197-232

Zhang D, Williams B, Mikkelsen D, Li X, Keates HL, Lisle At, Collins HM, Fincher GB, Bird AR, Topping DL, Gidley MJ and Bryden WLA (2014) Soluble arabinoxylan-rich wheat fraction modulates amino acid digestion, gastrointestinal transit and microbial biomass in pigs fed a red meat-containing Western-style human diet. Journal of Nutrition (in press)

Zhang Q, Cheetamun R, Dhugga KS, Rafalski JA, Tingey SV, Shirley NJ, Taylor J, Hayes K, Beatty M, Bacic A, Burton RA and Fincher GB (2014) Spatial gradients in cell wall composition and transcriptional profiles along elongating maize internodes. BMC Plant Biology 14:27

Zhao X, Ouyang K, Gan S, Zeng W, Song L, Zhao S, Li J, Doblin MS, Bacic A, Chen X-Y, Marchant A, Deng X and Wu A-M (2014) Biochemical and molecular changes associated with heteroxylan biosynthesis in Neolamarckia cadamba (Rubiaceae) during xylogenesis. Frontiers in Plant Science 5:602, doi: 10.3389/fpls.2014.00602

2014 Publications authored or co-authored by ARC CoE PCW personnel not attributed to the CoE

Baby T, Hocking B, Tyerman SD, Gilliham M and Collins C. Modified Method for Producing Grapevine Plants in Controlled Environments (2014) American Journal of Enology and Viticulture 65(2):261-267

Breuer D, Ivakov A, Samptahkumar A, Hollandt F, Persson S and Nikoloski Z (2014) Quantitative analyses of the plant cytoskeleton reveal underlying organizational principles. Journal of the Royal Society Interface 11: 20140362, doi: 10.1098/rsif.2014.0362

Byrt CS, Xu B, Krishnan M, Lightfoot D, Athman A, Jacobs A, Watson-Haigh N, Munns R, Tester M and Gilliham M (2014) The Na(+) transporter, TaHKT1; 5-D, limits shoot Na(+) accumulation in bread wheat. The Plant Journal 80(3):516-526

Dashnow H, Lonsdale A and Bourne PE (2014). Ten simple rules for writing a PLoS ten simple rules article. PLoS Computational Biology 10(10): e1003858

Hsieh YSY, Wijeyewickrema LC, Wilkinson BL, Pike RN and Payne RJ (2014) Total synthesis of homogeneous hirudin P6: a sulfated and glycosylated leech-derived protein with potent thrombin inhibitory activity. Angewande Chemie International Edition 53:3947-3951

Lin D, Lopez-Sanchez P, Li R and Li Z (2014) Production of bacterial cellulose by Gluconacetobacter hansenii CGMCC 3917 using only waste beer yeast as nutrient source. Bioresource Technology 151:113-119

Lopez-Sanchez P, de Vos RCH, Jonker HH, Mumm R, Hall RD, Bialek L, Leenman R, Strassburg K, Vreeken R, Hankemeier T, Schumma S and van Duynhoven J (2014) Comprehensive metabolomics to evaluate the impact of industrial processing on the phytochemical composition of vegetable purees. Food Chemistry 168(1): 348–355

Luna E, van Hulten M, Zhang Y, Berkowitz O, López A, Pétriacq P, Sellwood MA, Chen B, Burrell M, van de Meene AML, Pieterse CMJ, Flors V and Ton J (2014) Plant perception of beta-aminobutyric acid is mediated by an aspartyl-tRNA synthetase. Nature Chemical Biology 10(6):450-456, doi:10.1038/NCHEMBIO.1520

Manrique-Torres YJ, Lee DJ, Islam F, Nissen LM, Cichero JAY, Stokes JR and Steadman KJ (2014) Crushed Tablets: Does the administration of food vehicles and thickened fluids to aid medication swallowing alter drug release? Journal of Pharmacy & Pharmaceutical Sciences 17(2):207-219

Rajasundaram D, Selbig J, Persson S and Klie S (2014) Co-ordination and divergence of cell-spcecific transcription and translation of genes in arabidopsis root cells. Annals of Botany 114:1109-1123 

Ruprecht C, Carroll A and Persson S (2014) T-DNA-Induced chromosomal translocations in feronia and anxur2 mutants reveal implications for the mechanism of collapsed pollen due to chromosomal rearrangements (2014) Molecular Plant 7: 1591-1594

Rybak K, Steiner A, Synek L, Klaeger S, Kulich I, Facher E, Wanner G, Kuster B, Zarsky V, Persson S and Assaad FF (2014) Plant cytokinesis is orchestrated by the sequential action of the TRAPPII and exocyst tethering complexes. Developmental Cell 29:607-620

Shewan HM and Stokes JM (2014) Analytically predicting the viscosity of hard sphere suspensions from the particle size distribution. Journal of Non-Newtonian Fluid Mechanics (2014) doi:10.1016/j.jnnfm.2014.09.002

Shewan HM and Stokes JR (2014) Review of techniques to manufacture micro-hydrogel particles for the food industry and their applications. Journal of Food Engineering 119(4): 781-792

Stokes JR (2014) Aqueous Lubrication and Food Emulsions.In: Aqueous Lubrication: Natural and Biomimetic Approaches, Spencer E (editor), World Scientific, pp 73-102

Tucker MR, Roodbarkelari F, Truernit EB, Adamski NM, Hinze A, Lohmüller B, Würschum T and Laux T (2014) Accession-specific modifiers act with ZWILLE/ARGONAUTE10 to maintain shoot meristem stem cells during embryogenesis in Arabidopsis. BMC genomics 14(1): 809, doi: 10.1186/1471-2164-14-809

Würschum T, Liu W, Alheit KV, Tucker MR, Gowda M, Weissmann EA, Hahn V and Maurer HP (2014) Adult plant development in triticale (× Triticosecale Wittmack) is controlled by dynamic genetic patterns of regulation. G3 4(9):1585-1591 

Würschum T, Liu W, Busemeyer L, Tucker MR, Reif JC, Weissmann EA, Hahn V, Ruckelshausen A and Maurer HP (2014) Mapping dynamic QTL for plant height in triticale. BMC Genetics 15:59, doi:10.1186/1471-2156-15-59

Xie DF, Flanagan BM, Li M, Mateyawa S, Sangwan P, Truss RW, Halley PJ, Strounina EV, Whittaker AK, Gidley MJ, Dean KM, Nicholson TM, Shamshina JL, Rogers RD and McNally T (2014) Characteristics of starch-based films plasticised by glycerol and by the ionic liquid 1-ethyl-3-methylimidazolium acetate: a comparative study. Carbohydrate Polymers 111:841-848

Zhang B, Wang K, Hasjim J, Li EP, Flanagan BM, Gidley MJ and Dhital S (2014) Freeze drying changes the structure and digestibility of ß-polymorphic starches. Journal of Agricultural and Food Chemistry 62(7):1482-1491

Zhang B, Dhital S, Flanagan BM and GidleyMJ (2014) Mechanism for Starch Granule Ghost Formation Deduced from Structural and Enzyme Digestion Properties. Journal of Agricultural and Food Chemistry 62(3):760-761

 

2013 Publications attributed to the ARC Centre of Excellence in Plant Cell Walls

Ashton L, Pudney PDA, Blanch EW, Yakubov GE (2013) Understaning glycoprotein behaviours using Raman and Raman optical activity spectroscopies: Characterising the entanglement induced conformational changes in oligosaccharide chains of mucin. Advances in Colloid and Interface Science doi: 10.1016/j.cis.2013.06.005

Boehm MW, Baier SK, Stokes JR (2013) Capturing changes in structure and rehology of an oily brittle snack food during in vitro oral processing. International Food Journal 54:423-431

Burton RA and Fincher GB (2014) Plant Cell Wall Engineering: Applications in Biofuel Production and Improved Human Health. Current Opinion in Plant Biology 26:79-84 doi: 10.1016/j.copbio.2013.10.007 (available online December 2013)

Byrt CS, Betts NS, Farrohki N and Burton RA (2013) Deconstructing plant biomass: cell wall structure and novel manipulation strategies. In: Biofuel Crops: Production, Physiology and Genetics. BP Singh , ed. Wallingford: CABI. Chapter 7

Comino P, Collins HM, Lahnstein J and Gidley MJ (2013) Separation and Purification of Soluble Polymers and Cell Wall Fractions from Wheat, Rye and Hull less Barley Endosperm Flours for Structure-Nutrition Studies. Journal of Agricultural and Food Chemistry 61:12111-12122

Dawei L, Ford K, Roessner U, Natera S, Cassin AM, Patterson J and Bacic A (2013) Rice suspension cultured cells are evaluated as a model system to study salt responsive networks in plants using a combined proteomic and metabolomic profiling approach. Proteomics 13:2046-2062

Dhital S, Shelat K, Shrestha AK and Gidley MJ (2013) Heterogeneity in maize starch granule internal architecture deduced from diffusion of fluorescent dextran probes. Carbohydrate Polymers 93:365–373

Dhital S, Lin AH, Hamaker BR and Gidley MJ (2013) Mammalian Mucosal α-Glucosidases Coordinate with α-Amylase in the Initial Starch Hydrolysis Stage to Have a Role in Starch Digestion beyond Glucogenesis. PLoS One 8:e62546

Fredericks CH, Fanning KJ, Gidley MJ, Netzel G, Zabaras D, Herringtone M and Netzel M (2013) High-anthocyanin strawberries through cultivar selection. Journal of the Science of Food and Agriculture 93:846-852

Gibbins HL, Proctor GB, Yakubov GE, Wilson S and Carpenter GH (2013) Concentration of salivary protective proteins within the bound oral mucosal pellicle. Oral Diseases doi: 10.1111/odi.12194

Gidley MJ (2013) Hydrocolloids in the digestive tract and related health implications. Current Opinion in Colloid and Interface Science 18:371-378

Hasjim J, Li E and Dhital S (2013) Milling of rice grains: effects of starch/flour structures on gelatinization and pasting properties. Carbohydrate Polymers 92:682–690

Hasjim J, Li E and Dhital S (2013) Effects of grain milling on starch structures and flour/starch properties. Starch-Stärke 00:1-13. DOI: 10.1002/star.201200224

Hill CB, Taylor JD, Edwards J, Mather D, Bacic A, Langridge P and Roessner U (2013) Whole genome mapping of agronomic and metabolic traits to identify novel quantitative trait loci in bread wheat (Triticum aestivum L.) grown in a water-limited environment. Plant Physiology 162:1266-1281

Johnston S, Prakash R, Chen NJ, Kumagai MH, Turano HM, Cooney JM, Atkinson RG, Paul RE, Cheetamun R, Bacic A, Brummell DA and Schroeder R (2013) An enzyme activity capable of endotransglycosylation of heteroxylan polysaccharides is present in plant primary cell walls. Planta 237:173-187

Lampugnani E, Moller I, Cassin A, Jones DF, Koh PL, Ratnayake S, Beahan CT, Wilson SM, Bacic A, Newbigin E (2013) In vitro grown pollen tubes of Nicotiana alata actively synthesise a fucosylated xyloglucan. PLoS ONE, 8 (10) e77140. doi:10.1371/journal.pone.0077140

Liu W, Maurer HP, Reif JC, Melchinger AE, Utz HF, Tucker MR, Ranc N, Della Porta G and Würschum T (2013) Optimum design of family structure and allocation of resources in association mapping with lines from multiple crosses. Heredity 110:71–79

Milne RJ, Byrt CS, Patrick JW and Grof CPL (2013) Are sucrose transporter expression profiles linked with patterns of biomass partitioning in Sorghum phenotypes? Frontiers in Plant Science 4:223

Padayachee A, Netzel G, Netzel M, Day L, Mikkelsen D and Gidley MJ (2013) Lack of release of bound anthocyanins and phenolic acids from carrot plant cell walls and model composites during simulated gastric and small intestinal digestion. Food Function 4:906-916

Selway N and Stokes JR (2013) Insights into the dynamics of oral lubrication and mouthfeel using soft tribology: differentiating semi-fluid foods with similar rheology. International Food Journal 54:423-431

Shelden MC, Roessner U, Sharp RE, Tester M and Bacic A (2013) Genetic variation in the root growth response of barley genotypes to salinity stress. Functional Plant Biology 40:516-530

Stokes JR, Boehme MW and Baier S (2013) Oral processing, texture and mouthfeel: From rheology to tribology and beyond. Current Opinion in Colloid & Interface Science http://dx.doi.org/10.1016/j.cocis.2013.04.010

Trafford K and Fincher GB (2013) Barley grain carbohydrates: starch and cell walls. In:  Barley: Chemistry and Technology (2nd Edition). PR Shewry and S Ullrich, eds. Saint Paul MN: AACC Monograph Series

Trafford K, Haleux P, Henderson M, Parker M, Shirley NJ, Tucker MR, Fincher GB and Burton RA (2013) Grain development in Brachypodium and other grasses: possible interactions between cell expansion, starch deposition, and cell-wall synthesis. Journal of Experimental Botany 64:5033-5047

Tucker MR and Koltunow AMG (2013) Traffic monitors at the cell periphery: the role of cell walls during early female reproductive cell differentiation in plants. Current Opinion in Plant Biology 17:137-145

Van Sluyter S, Warnock N, Schmidt S, Anderson P, Van Kan JAL and Bacic A (2013) An aspartic acid protease from Botrytis cinerea removes haze forming proteins during white winemaking. Journal of Agricultural and Food Chemistry 61 9705-9711

Wijetunge CD, Li Z, Saeed I, Bowne J, Hsu AL, Roessner U, Bacic A and Halgamuge SK (2013) Exploratory analysis of high-throughput metabolomics data. Metabolomics 9:1311-1320

Würschum T, Tucker MR and Maurer HP (2013) Stress treatments influence efficiency of microspore embryogenesis and green plant regeneration in hexaploid triticale (x Tritosecale Wittmack L.). In Vitro Cellular and Developmental Biology-Plant 50:143-148

Zhang B, Dhital S and Gidley MJ (2013) Synergistic and antagonistic effects of alpha-amylase and amyloglucosidase on starch digestion. Biomacromolecules 14:1945-1954
 

2013 Publications authored or co-authored by ARC CoE PCW personnel not attributed to the CoE

Conn SJ, Hocking B, Dayod M, Xu B, Athman A, Henderson S, Aukett L, Conn V, Shearer MK, Fuentes S, Tyerman SD and Gilliham M (2013) Protocol: optimising hydroponic growth syst