2017 Publications attributed to the ARC Centre of Excellence in Plant Cell Walls

Amanda D, Doblin MS, Galletti R, Bacic A, Ingram GC, Johnson KL. (2017) Regulation of cell wall genes in response to DEFECTIVE KERNEL1 (DEK1)-induced cell wall changes. Plant Signaling & Behavior 12: e1345405.

Amanda D, Doblin MS, MacMillan CP, Galletti R, Golz JF, Bacic A, Ingram GC, Johnson KL. (2017) Arabidopsis DEFECTIVE KERNEL1 regulates cell wall composition and axial growth in the inflorescence stem. Plant Direct doi: 10.1002/pld3.27.

Betts NS, Berkowitz O, Liu R, Collins HM, Skadhauge B, Dockter C, Burton RA, Whelan J, Fincher GB. (2017) Isolation of tissues and preservation of RNA from intact, germinated barley grain. The Plant Journal 91: 754–765.

Betts NS, Wilkinson LG, Khor SF, Shirley NJ, Lok F, Skadhauge B, Burton RA, Fincher GB, Collins HM. (2017) Morphology, carbohydrate distribution, gene expression, and enzymatic activities related to cell wall hydrolysis in four barley varieties during simulated malting. Frontiers in Plant Science doi:10.3389/fpls.2017.01872.

Bhattarai RR, Dhital S, Wu P, Chen XD, Gidley MJ. (2017) Digestion of isolated legume cells in a stomach-duodenum model: Three mechanisms limit starch and protein hydrolysis. Food & Function 8: 2573–2582.

Byrt CS, Munns R, Burton RA, Gilliham M, Wege S. (2018) Root cell wall solutions for crop plants in saline soils. Plant Science 269: 47–55.

Chen SQ, Mikkelsen D, Lopez-Sanchez P, Wang D, Martinez-Sanz M, Gilbert EP, Flanagan BM, Gidley MJ. (2017) Characterisation of bacterial cellulose from diverse Komagataeibacter strains and their application to construct plant cell wall analogues. Cellulose 24: 1211–1226.

Cho SH, Purushotham P, Fang C, Maranas C, Díaz-Moreno SM, Bulone V, Zimmer J, Kumar M, Nixon BT. (2017) Synthesis and self-assembly of cellulose microfibrils from reconstituted cellulose synthase. Plant Physiology doi:10.1104/pp.17.00619.

Chowdhury J, Lück S, Rajaraman J, Douchkov D, Shirley NJ, Schwerdt JG, Schweizer P, Fincher GB, Burton RA, Little A. (2017) Altered expression of genes implicated in xylan biosynthesis affects penetration resistance against powdery mildew. Frontiers in Plant Science 8: 445.

Comino P, Williams BA, Gidley MJ. (2017) In vitro fermentation gas kinetics and end-products of soluble and insoluble cereal flour dietary fibres are similar. Food & Function 9: 898–905.

Dolan GK, Yakubov GE, Bonilla MR, Lopez-Sanchez P, Stokes JR. (2017) Friction, lubrication, and in situ mechanics of poroelastic cellulose hydrogels. Soft Matter 13: 3592–3601.

Gartaula G, Dhital S, Pleming D, Gidley MJ. (2017) Isolation of wheat endosperm cell walls: Effects of non-endosperm flour components on structural analyses. Journal of Cereal Science 74: 165–173.

Giacomello S, Salmén F, Terebieniec BK, Vickovic S, Navarro JF, Alexeyenko A, Reimegård J, McKee LS, Mannapperuma C, Bulone V et al. (2017) Spatially resolved transcriptome profiling in model plant species. Nature Plants 3: 17061.

Gómez-Mascaraque LG, Dhital S, López-Rubio A, Gidley MJ. (2017) Dietary polyphenols bind to potato cells and cellular components. Journal of Functional Foods 37: 283–292.

Hassan AS, Houston K, Lahnstein J, Shirley N, Schwerdt JG, Gidley MJ, Waugh R, Little A, Burton RA. (2017) A genome wide association study of arabinoxylan content in 2-row spring barley grain. PLoS One 12: e0182537.

Ho TT, Selway N, Krasowska M, Yakubov GE, Stokes JR, Beattie DA. (2017) Formation and tribology of fucoidan/chitosan polyelectrolyte multilayers on PDMS substrates. Biotribology 12: 15–23.

Jiang G, Yan H, Wu F, Zhang D, Zeng W, Qu H, Chen F, Tan L, Duan X, Jiang Y. (2017) Litchi fruit LcNAC1 is a target of LcMYC2 and regulator of fruit senescence through its interaction with LcWRKY1. Plant and Cell Physiology 58: 1075–1089.

Johnson KL, Cassin AM, Lonsdale A, Bacic A, Doblin MS, Schultz CJ. (2017) A motif and amino acid bias bioinformatics pipeline to identify hydroxyproline-rich glycoproteins. Plant Physiology doi:10.1104/pp.17.00294.

Johnson KL, Cassin AM, Lonsdale A, Wong GK, Soltis D, Miles NW, Melkonian M, Melkonian B, Deyholos MK, Leebens-Mack J, Rothfels CJ, Stevenson DW, Graham SW, Wang X, Wu S, Pires JC, Edger PP, Carpenter EJ, Bacic A, Doblin MS, Schultz CJ. (2017) Insights into the evolution of hydroxyproline rich glycoproteins from 1000 plant transcriptomes. Plant Physiology doi:10.1104/pp.17.00295.

Johnson KL, Gidley MJ, Bacic A, Doblin MS. (2017) Cell wall biomechanics: a tractable challenge in manipulating plant cell walls ‘fit for purpose’! Current Opinion in Biotechnology 48: 163–171.

Kannam SK, Oehme DP, Doblin MS, Gidley MJ, Bacic A, Downton MT. (2017) Hydrogen bonds and twist in cellulose microfibrils. Carbohydrate Polymers 175: 433–439.

Lau ET, Johnson SK, Williams BA, Mikkelsen D, McCourt E, Stanley RA, Mereddy R, Halley PJ, Steadman KJ. (2017) Optimizing prednisolone loading into distiller’s dried grain kafirin microparticles, and in vitro release for oral delivery. Pharmaceutics 9: 17.

Lauer JC, Cu S, Burton RA, Eglinton JK. (2017) Variation in barley (1→ 3, 1→ 4)-β-glucan endohydrolases reveals novel allozymes with increased thermostability. Theoretical and Applied Genetics 130: 1053–1063.

Lauer JC, Yap K, Cu S, Burton RA, Eglinton JK. (2017) Novel barley (1→ 3, 1→ 4)-β-glucan endohydrolase alleles confer increased enzyme thermostability. Journal of Agricultural and Food Chemistry 65: 421–428.

Lim WL, Collins HM, Singh RR, Kibble NA, Yap K, Taylor J, Fincher GB, Burton RA. (2017) Method for hull-less barley transformation and manipulation of grain mixed-linkage beta-glucan. Journal of Integrative Plant Biology doi: 10.1111/jipb.12625.

Lopez-Sanchez P, Martinez-Sanz M, Bonilla MR, Wang D, Gilbert EP, Stokes JR, Gidley MJ. (2017) Cellulose-pectin composite hydrogels: Intermolecular interactions and material properties depend on order of assembly. Carbohydrate Polymers 162: 71–81.

Lorbeer AJ, Charoensiddhi S, Lahnstein J, Lars C, Franco CM, Bulone V, Zhang W. (2017) Sequential extraction and characterization of fucoidans and alginates from Ecklonia radiata, Macrocystis pyrifera, Durvillaea potatorum, and Seirococcus axillaris. Journal of Applied Phycology 29:1515–1526.

Lowe R, Shirley N, Bleackley M, Dolan S, Shafee T. (2017) Transcriptomics technologies. PLOS Computational Biology 13: e1005457. 5.04

Martínez-Sanz M, Mikkelsen D, Flanagan BM, Gidley MJ, Gilbert EP. (2017) Multi-scale characterisation of deuterated cellulose composite hydrogels reveals evidence for different interaction mechanisms with arabinoxylan, mixed-linkage glucan and xyloglucan. Polymer 124: 1–11.

Martínez-Sanz M, Pettolino F, Flanagan B, Gidley MJ, Gilbert EP. (2017) Structure of cellulose microfibrils in mature cotton fibres. Carbohydrate Polymers 175: 450–463.

Meldrum OW, Yakubov GE, Gartaula G, McGuckin MA, Gidley MJ. (2017) Mucoadhesive functionality of cell wall structures from fruits and grains: Electrostatic and polymer network interactions mediated by soluble dietary polysaccharides. Scientific Reports 7: 15794.

Mitra S, Lahnstein J, James AP, Fenton HK, Burton RA, Cato L, Solah VA. (2017) Effect of processing on viscosity and molecular weight of (1, 3)(1, 4)-β-glucan in Western Australian oat cultivars. Cereal Chemistry 94: 625–632.

Phan AD, Flanagan BM, D'Arcy BR, Gidley MJ. (2017) Binding selectivity of dietary polyphenols to different plant cell wall components: quantification and mechanism. Food Chemistry 233: 216–227.

Pluschke A, Williams B, Zhang D, Gidley M. (2017) Dietary pectin and mango pulp effects on small intestinal enzyme activity levels and macronutrient digestion in grower pigs. Food & Function 9: 991–999.

Pluschke AM, Jochems PG, Williams BA, Gidley MJ. (2017) Protection of α-amylase from proteolysis by adsorption to feed components in vitro and in the porcine small intestine. Animal Production Science 58: 640–645.

Ruprecht C, Vaid N, Proost S, Persson S, Mutwil M. (2017) Beyond genomics: Studying evolution with gene coexpression networks. Trends in Plant Science 22: 298–307.

Ruthes AC, Martínez-Abad A, Tan H-T, Bulone V, Vilaplana F. (2017) Sequential fractionation of feruloylated hemicelluloses and oligosaccharides from wheat bran using subcritical water and xylanolytic enzymes. Green Chemistry 19: 1919–1931.

Sánchez-Rodríguez C, Shi Y, Kesten C, Zhang D, Sancho-Andrés G, Ivakov A, Lampugnani ER, Sklodowski K, Fujimoto M, Nakano A, Bacic A, Wallace IS, Ueda T, Van Damme D, Zhou Y, Persson S. (2017) The cellulose synthases are cargo of the TPLATE adaptor complex. Molecular Plant 11: 346–349.

Srivastava V, McKee LS and Bulone V. (2017). Plant Cell Walls. In: eLS. Wiley Online Library. Book

Tucker MR, Ma C, Phan J, Neumann K, Shirley NJ, Hahn MG, Cozzolino D, Burton RA. (2017) Dissecting the genetic basis for seed coat mucilage heteroxylan biosynthesis in Plantago ovata using gamma irradiation and infrared spectroscopy. Frontiers in Plant Science 8: 326.

Wilkinson LG, Tucker MR. (2017) An optimised clearing protocol for the quantitative assessment of sub-epidermal ovule tissues within whole cereal pistils. Plant Methods 13: 67.

Williams BA, Grant LJ, Gidley MJ, Mikkelsen D. (2017) Gut fermentation of dietary fibres: Physico-chemistry of plant cell walls and implications for health. International Journal of Molecular Sciences 18: 2203.

Wu P, Bhattarai RR, Dhital S, Deng R, Chen XD, Gidley MJ. (2017) In vitro digestion of pectin- and mango-enriched diets using a dynamic rat stomach-duodenum model. Journal of Food Engineering 202: 65–78.

Xing X, Hsieh YS, Yap K, Ang ME, Lahnstein J, Tucker MR, Burton RA, Bulone V. (2017) Isolation and structural elucidation by 2D NMR of planteose, a major oligosaccharide in the mucilage of chia (Salvia hispanica L.) seeds. Carbohydrate Polymers 175: 231–240.

Xu Y, Atrens AD, Stokes JR. (2017) Rheology and microstructure of aqueous suspensions of nanocrystalline cellulose rods. Journal of Colloid and Interface Science 496: 130–140.

Yu L, Yakubov GE, Zeng W, Xing X, Stenson J, Bulone V, Stokes JR. (2017) Multi-layer mucilage of Plantago ovata seeds: Rheological differences arise from variations in arabinoxylan side chains. Carbohydrate Polymers 165: 132-141.

Zeng W, Ford KL, Bacic T, Heazlewood JL. (2017) N-glycan micro-heterogeneity in glycoproteins of Arabidopsis. Molecular & Cellular Proteomics doi:10.1074/mcp.RA117.000165.

2017 Publications authored or co-authored by ARC CoE PCW personnel not attributed to the CoE

A He, S Huang, JH Yun, H Wu, Z Jiang, J Stokes, S Jiao, L Wang et al.  (2017) Tribological performance and lubrication mechanism of alumina nanoparticle water-based suspensions in ball-on-three-plate testing Tribology Letters 65 (2), 40.

Al-Rabadi GJ, Hosking BJ, Torley PJ, Williams BA, Bryden WL, Nielsen SG, Black JL, Gidley MJ. Regrinding large particles from milled grains improves growth performance of pigs. Animal Feed Science and Technology. 2017 Nov 1;233:53-63.

BLF Kaplan, S Dhital, J Stokes, N Park, KS Seo - (2017) Cannabidiol (CBD) induces functional CD4+ CD25+ FOXP3+ Tregs in response to low level T cell activation JOURNAL OF NEUROIMMUNE PHARMACOLOGY, 2017

CAZypedia Consortium (Bulone). Ten years of CAZypedia: A living encyclopedia of carbohydrate-active enzymes. Glycobiology. 2017 Oct 11:cwx089.

Dahlin P, Müller MC, Ekengren S, McKee LS, Bulone V (2017) The Impact of steroidal glycoalkaloids on the physiology of Phytophthora infestans, the causative agent of potato late blight. Mol Plant Microbe Interact, in press, doi: 10.1094/MPMI-09-16-0186-R.

Dahlin P, Srivastava V, Ekengren S, McKee LS, Bulone V (2017) Comparative analysis of sterol acquisition in the oomycetes Saprolegnia parasitica and Phytophthora infestans. PLoS ONE 12(2): e0170873.

He A, Huang S, Yun JH, Jiang Z, Stokes J, Jiao S, Wang L, Huang H. The pH-dependent structural and tribological behaviour of aqueous graphene oxide suspensions. Tribology International. 2017 Dec 1;116:460-9.

Hunter A, Dayalan S, De Souza D, Power B, Lorrimar R, Szabo T, Nguyen T, O’Callaghan S, Hack J, Pyke J, Nahid A, Barrero R, Roessner U, Likic V, Tull D, Bacic A, McConville M, Bellgard M (2017) MASTR-MS: A web-based collaborative Laboratory Information Management System (LIMS) for Metabolomics. Metabolomics 13(2): 14

Larsbrink J, Tuveng TR, Pope PB, Bulone V, Eijsink VGH, Brumer H, McKee LS (2017) Proteomic data on enzyme secretion and activity in the bacterium Chitinophaga pinensis. Data in Brief 11: 484-490.

Larsbrink J, Tuveng TR, Pope PB, Bulone V, Eijsink VGH, Brumer H, McKee LS (2017) Proteomic insights into mannan degradation and protein secretion by the forest floor bacterium Chitinophaga pinensis. J Proteom 156: 63–74.

Mok L, Wynne JW, Tachedjian M, Shiell B, Ford K, Matthews DA, Bacic A, Michalski WP. Proteomics informed by transcriptomics for characterising differential cellular susceptibility to Nelson Bay orthoreovirus infection. BMC genomics. 2017 Aug 14;18(1):615.

Pang Z, Srivastava V, Liu X, Bulone V (2017) Quantitative proteomics links metabolic pathways to specific developmental stages of the plant pathogenic oomycete Phytophthora capsici. Mol Plant Pathol 18: 378–390.

Rocha TL, Soll CB, Boughton BA, Silva TS, Oldach K, Firmino AA, Callahan DL, Sheedy J, Silveira ER, Carneiro RN, Silva LP, Poleza VLP, Pelegrinia PB, Bacic A,Grossi-de-Saa MF, Roessner U. (2017) Prospection and identification of nematotoxic compounds from Canavalia ensiformis seeds effective in the control of the root knot nematode Meloidogyne incognita. Biotechnology Research and Innovation. 2017 Nov 7.

Rodrigues SA, Selway N, Morgenstern MP, Motoi L, Stokes JR, James BJ. Lubrication of chocolate during oral processing. Food & function. 2017;8(2):533-44.

Samalova M, Mélida H, Vilaplana F, Bulone V, Soanes DM, Talbot NJ, Gurr SJ (2017) The β-1,3-glucanosyltransferases (Gels) affect the structure of the rice blast fungal cell wall during appressorium-mediated plant infection. Cell Microbiol 19(3) e12659.

Selway N, Chan V, Stokes JR. Influence of fluid viscosity and wetting on multiscale viscoelastic lubrication in soft tribological contacts. Soft Matter. 2017;13(8):1702-15.

Shewan HM, Stokes JR, Cloitre M. Particle–wall tribology of slippery hydrogel particle suspensions. Soft Matter. 2017;13(10):2099-106.

Taochy C, Gursanscky NR, Cao J, Fletcher SJ, Dressel U, Mitter N, Tucker MR, Koltunow AMG, Bowman JL, Vaucheret H and Carroll BJ (2017) A genetic screen for impaired systemic RNAi in Arabidopsis highlights the crucial role of DCL2. Plant Physiology, 175(3):1424-1437. doi: 10.1104/pp.17.01181

Tobin AB, Heunemann P, Wemmer J, Stokes JR, Nicholson T, Windhab EJ, Fischer P. Cohesiveness and flowability of particulated solid and semi-solid food systems. Food & function. 2017;8(10):3647-53.

Würschum T, Langer S, Longin F, Tucker MR, Leiser W (2017) A modern Green Revolution gene for reduced height in wheat. The Plant Journal, 92(5):892-903. doi: 10.1111/tpj.13726

Yao K, Meng Q, Bulone V, Zhou Q (2017) Flexible and responsive chiral nematic cellulose nanocrystal/poly (ethylene glycol) composite films with uniform and tunable structural color. Advanced Materials, in press, doi: 10.1002/adma.201701323.

Yu W, Tan X, Zou W, Hu Z, Fox GP, Gidley MJ, Gilbert RG. Relationships between protein content, starch molecular structure and grain size in barley. Carbohydrate polymers. 2017 Jan 2;155:271-9.

2016 Publications attributed to the ARC Centre of Excellence in Plant Cell Walls

Amanda D, Doblin MS, Galletti R, Bacic A, Ingram GC and Johnson KL (2016) DEFECTIVE KERNEL1 (DEK1) regulates cell walls in the leaf epidermis. Plant Physiology 172 (4), 2204-2218.

Bhattarai RR, Dhital S and Gidley MJ (2016) Interactions among macronutrients in wheat flour determine their enzymic susceptibility. Food Hydrocolloids 61, 415-425.

Bonilla MR, Lopez-Sanchez P, Gidley MJ and Stokes JR (2016) Micromechanical model of biphasic biomaterials with internal adhesion: application to nanocellulose hydrogel composites. Acta biomaterialia 29,149-60.

Byrt CS, Betts NS, Tan HT, Lim WL, Ermawar RA, Nguyen HY, Shirley NJ, Lahnstein J, Corbin K, Fincher GB and Knauf V (2016) Prospecting for Energy-Rich Renewable Raw Materials: Sorghum Stem Case Study. PloS ONE,11(5):e0156638.

Chowdhury J, Schober MS, Shirley NJ, Singh RR, Jacobs AK, Douchkov D, Schweizer P, Fincher GB, Burton RA and Little A (2016) Down‐regulation of the glucan synthase‐like 6 gene (HvGsl6) in barley leads to decreased callose accumulation and increased cell wall penetration by Blumeria graminis f. sp. hordei. New Phytologist, 212 (2), 434-43.

Comino P, Collins H, Lahnstein J and Gidley MJ. Effects of diverse food processing conditions on the structure and solubility of wheat, barley and rye endosperm dietary fibre. Journal of Food Engineering, 169, 228-37.

Corbin KR, Betts NS, van Holst N, Jiranek V, Chambers D, Byrt CS, Fincher GB and Burton RA (2016) Low-Input Fermentations of Agave tequilana Leaf Juice Generate High Returns on Ethanol Yields. BioEnergy Research, 9, 1142.

Dhital S, Bhattarai RR, Gorham J and Gidley MJ (2016) Intactness of cell wall structure controls the in vitro digestion of starch in legumes. Food & function 7 (3), 1367-1379.

Dimitroff G, Little A, Lahnstein J, Schwerdt JG, Srivastava V, Bulone V, Burton RA and Fincher GB (2016) (1,3; 1,4)-β-Glucan Biosynthesis by the CSLF6 Enzyme: Position and Flexibility of Catalytic Residues Influence Product Fine Structure. Biochemistry 55 (13), 2054-2061.

Dolan GK, Yakubov GE, Greene GW, Amiralian N, Annamalai PK, Martin DJ and Stokes JR (2016) Dip-and-Drag Lateral Force Spectroscopy for Measuring Adhesive Forces between Nano-fibers. Langmuir 32 (50), 13340–13348.

Douchkov D, Lueck S, Hensel G, Kumlehn J, Rajaraman J, Johrde A, Doblin MS, Beahan CT, Kopischke M, Fuchs R, Lipka V, Niks RE, Bulone V, Chowdhury J, Little A, Burton RA, Bacic A, Fincher GB and Schweizer P. (2016) The barley (Hordeum vulgare) cellulose synthase-like D2 gene (HvCslD2) mediates penetration resistance to host-adapted and nonhost isolates of the powdery mildew fungus. New Phytologist 212 (2), 421-433.

Emanuelle S, Doblin MS, Stapleton DI, Bacic A and Gooley PR.  (2016) Molecular insights into the enigmatic metabolic regulator, SnRK1.  Trends in Plant Science 21 (4), 341-353.

Fincher GB (2013) Chemistry and Physicochemistry of Non-starchy Polysaccharides. In: Encyclopedia of Food Grains, 2nd Edition  (C. Wrigley, H Corke and C.E. Walker, eds), in the press.  Elsevier Academic Press.

Ford KL, Chin T, Srivastava V, Zeng W, Doblin MS, Bulone V and Bacic A (2016) Comparative “Golgi” Proteome Study of Lolium multiflorum and Populus trichocarpa. Proteomes 4 (3), 23.

Frost JK, Flanagan BM, Brummell DA, O'Donoghue EM, Mishra S, Gidley MJ and Monro JA (2016) Composition and structure of tuber cell walls affect in vitro digestibility of potato (Solanum tuberosum L.). Food & Function 7 (10), 4202-4212.

Gorham JB, Williams BA, Gidley MJ and Mikkelsen D (2016) Visualization of microbe-dietary remnant interactions in digesta from pigs, by fluorescence in situ hybridization and staining methods; effects of a dietary arabinoxylan-rich wheat fraction. Food Hydrocolloids 52, 952-62.

Grundy MM, Edwards CH, Mackie AR, Gidley MJ, Butterworth PJ and Ellis PR (2016) Re-evaluation of the mechanisms of dietary fibre and implications for macronutrient bioaccessibility, digestion and postprandial metabolism. The British Journal of Nutrition 116 (5),816.

Gunness P, Flanagan BM, Mata JP, Gilbert EP and Gidley MJ (2016)  Molecular interactions of a model bile salt and porcine bile with (1, 3: 1, 4)-β-glucans and arabinoxylans probed by 13 C NMR and SAXS. Food Chemistry197, 676-85.

Gunness P, Michiels J, Vanhaecke L, De Smet S, Kravchuk O, van de Meene A and Gidley MJ (2017) Reduction in circulating bile acid and restricted diffusion across the intestinal epithelium are associated with a decrease in blood cholesterol in the presence of oat b-glucan. The FASEB Journal 30 (12),  4227-4238.

Gunness P, Williams BA, Gerrits WJ, Bird AR, Kravchuk O and Gidley MJ (2016) Circulating triglycerides and bile acids are reduced by a soluble wheat arabinoxylan via modulation of bile concentration and lipid digestion rates in a pig model. Molecular Nutrition & Food Research 60 (3), 642-651.

Hervé C, Siméon A, Jam M, Cassin A, Johnson KL, Salmeán AA, Willats WG, Doblin MS, Bacic A and Kloareg B (2016) Arabinogalactan proteins have deep roots in eukaryotes: identification of genes and epitopes in brown algae and their role in Fucus serratus embryo development. New Phytologist 209 (4), 1428-1441.

Hill CB, Cassin A, Keeble-Gagnere G, Doblin MS, Bacic A and Roessner U (2016) De novo transcriptome assembly and analysis of differentially expressed genes of two barley genotypes reveal root-zone-specific responses to salt exposure. Scientific Reports 6, doi: 10.1038/srep31558.

Hocking B, Tyerman SD, Burton RA and Gilliham M (2016) Fruit Calcium: Transport and Physiology. Frontiers in Plant Science 7,569.

Houston K, Tucker MR, Chowdhury J, Shirley N and Little A (2016) The plant cell wall: a complex and dynamic structure as revealed by the responses of genes under stress conditions. Frontiers in Plant Science 7:984. 

Kovalchuk N, Chew W, Sornaraj P, Borisjuk N, Yang N, Singh R, Bazanova N, Shavrukov Y, Guendel A, Munz E and Borisjuk L (2016) The homeodomain transcription factor TaHDZipI‐2 from wheat regulates frost tolerance, flowering time and spike development in transgenic barley. New Phytologist 211(2), 671-87.

Kuang B, Zhao X, Zhou C, Zeng W, Ren J, Ebert B, Beahan CT, Deng X, Zeng Q, Zhou G and Doblin MS (2016) Role of UDP-glucuronic acid decarboxylase (UXS) in xylan biosynthesis in Arabidopsis. Molecular Plant 9,1119–1131.

Lampugnani ER, Ho YY, Moller IE, Koh PL, Golz JF, Bacic T and Newbigin E (2016) A Glycosyltransferase from Nicotiana alata Pollen Mediates Synthesis of a Linear (1, 5)-α-L-Arabinan When Expressed in Arabidopsis. Plant Physiology 170 (4), 1962–1974.

Li H, Turner MS and Dhital S (2016) Encapsulation of Lactobacillus plantarum in porous maize starch. LWT-Food Science and Technology 74, 542-549.

Lin D, Lopez-Sanchez P and Gidley MJ (2016) Interactions of pectins with cellulose during its synthesis in the absence of calcium. Food Hydrocolloids 52, 57-68.

Liu D, Martinez-Sanz M, Lopez-Sanchez P, Gilbert EP and Gidley MJ. Adsorption behaviour of polyphenols on cellulose is affected by processing history. Food Hydrocolloids 63,  496–507.

Lonsdale A, Davies M, Doblin MS and Bacic A (2016) Better than nothing? The limits of the prediction tool SecretomeP in the search for leaderless secretory proteins (LSPs) in plants. Frontiers in Plant Science 7, 1451.

Lopez-Sanchez P, Martinez-Sanz M, Bonilla MR, Wang D, Walsh CT, Gilbert EP, Stokes JR and Gidley MJ. Pectin impacts cellulose fibre architecture and hydrogel mechanics in the absence of calcium. Carbohydrate Polymers 153, 236-245.

Lopez-Sanchez P, Wang D, Zhang Z, Flanagan B and Gidley MJ. Microstructure and mechanical properties of arabinoxylan and (1, 3; 1, 4)-β-glucan gels produced by cryo-gelation. Carbohydrate Polymers 151, 862-870.

Low DY, Hodson MP, Williams BA, D’Arcy BR and Gidley MJ.  (2016)  Microbial biotransformation of polyphenols during in vitro colonic fermentation of masticated mango and banana. Food Chemistry 207, 214-222.

Marcotuli I, Houston K, Schwerdt JG, Waugh R, Fincher GB, Burton RA, Blanco A and Gadaleta A. Genetic Diversity and Genome Wide Association Study of β-Glucan Content in Tetraploid Wheat Grains. PloS One 11 (4), e0152590.

Marcotuli I, Hsieh YS, Lahnstein J, Yap K, Burton RA, Blanco A, Fincher GB and Gadaleta A.  (2016) Structural Variation and Content of Arabinoxylans in Endosperm and Bran of Durum Wheat (Triticum turgidum L.). Journal of Agricultural and Food Chemistry 64 (14), 2883-2892.

Mares DJ, Mrva K, and Fincher GB (2013) Enzyme Activities. In: Encyclopedia of Food Grains (C. Wrigley, H Corke and C.E. Walker, eds), accepted for publication.  Elsevier Academic Press.

Martínez-Sanz M, Gidley MJ and Gilbert EP (2016) Hierarchical architecture of bacterial cellulose and composite plant cell wall polysaccharide hydrogels using small angle neutron scattering. Soft matter 12, 1534-1549.

Martínez-Sanz M, Mikkelsen D, Flanagan B, Gidley MJ and Gilbert EP (2016) Multi-scale model for the hierarchical architecture of native cellulose hydrogels. Carbohydrate Polymers 147, 542-555.

Martínez-Sanz M, Mikkelsen D, Flanagan BM, Rehm C, de Campo L, Gidley MJ and Gilbert EP (2016) Investigation of the micro-and nano-scale architecture of cellulose hydrogels with plant cell wall polysaccharides: A combined USANS/SANS study. Polymer 105, 449-460.

McColl J, Horvath R, Yakubov GE and Ramsden JJ (2016) Surface rearrangement of adsorbed EGCG–mucin complexes on hydrophilic surfaces. International Journal of Biological Macromolecules 95, 704-12.

McKee LS, Sunner H, Anasontzis GE, Toriz G, Gatenholm P, Bulone V, Vilaplana F and Olsson L (2016) A GH115 α-glucuronidase from Schizophyllum commune contributes to the synergistic enzymatic deconstruction of softwood glucuronoarabinoxylan. Biotechnology for Biofuels 9, 2.

McKenna BA, Wehr JB, Mikkelsen D, Blamey F and Menzies NW (2016) Aluminium effects on mechanical properties of cell wall analogues. Physiologia Plantarum 158 (4), 382-388.

Oehme DP, Doblin MS, Wagner J, Bacic A, Downton MT and Gidley MJ (2016) Gaining insight into cell wall cellulose macrofibril organisation by simulating microfibril adsorption. Cellulose 22 (6), 3501-3520.

Pacheco-Villalobos D, Díaz-Moreno SM, van der Schuren A, Tamaki T, Kang YH, Gujas B, Novak O, Jaspert N, Li Z, Wolf S, Bulone V and Oecking C (2016) The Effects of High Steady State Auxin Levels on Root Cell Elongation in Brachypodium. The Plant Cell 28 (5), 1009-1024.

Paull RE, Chen NJ, Ming R, Wai CM, Shirley N, Schwerdt J and Bulone V. Carbon Flux and Carbohydrate Gene Families in Pineapple. Tropical Plant Biology 9 (3), 200-213.

Peukert M, Lim WL, Seiffert U, and Matros A (2016) Mass spectrometry imaging of metabolites in barley grain tissues. Current Protocols in Plant Biology 1, 574-591.

Phan JL, Tucker MR, Khor SF, Shirley N, Lahnstein J, Beahan C, Bacic A and Burton RA (2016) Differences in glycosyltransferase family 61 accompany variation in seed coat mucilage composition in Plantago spp. Journal of Experimental Botany 67 (22), 6481-6495.

Pierce BC, Wichmann J, Tran TH, Cheetamun R, Bacic A and Meyer AS (2016) Formation of water-soluble soybean polysaccharides from spent flakes by hydrogen peroxide treatment. Carbohydrate Polymers 144, 504-513.

Pluschke AM, Simmons GS, Keates HL, Cameron RD, Zhang D, Wright JD and Williams BA (2016) An updated method for the jugular catheterization of grower pigs for repeated blood sampling following an oral glucose tolerance test. Laboratory Animals doi: 10.1177/0023677216682772.

Purushotham P, Cho SH, Díaz-Moreno SM, Kumar M, Nixon BT, Bulone V and Zimmer J (2016) A single heterologously expressed plant cellulose synthase isoform is sufficient for cellulose microfibril formation in vitro. Proceedings of the National Academy of Sciences 113 (40), 11360-11365.

Qin LX, Chen Y, Zeng W, Li Y, Gao L, Li DD, Bacic A, Xu WL and Li XB (2016) The cotton β‐galactosyltransferase 1 (GalT1) that galactosylates arabinogalactan‐proteins participates in controlling fiber development. The Plant Journal 89 (5), 957-971.

Ratnayake S, Ford K and Bacic A (2016) Sequencing of Plant Wall Heteroxylans Using Enzymic, Chemical (Methylation) and Physical (Mass Spectrometry, Nuclear Magnetic Resonance) Techniques. Journal of Visualized Experiments (109), e53748.

Ruan Y-L and Fincher GB (2015) Manipulating carbohydrate metabolism for enhanced crop yield and industrial applications. Encyclopedia of Applied Plant Sciences Second Edition (ed. Thomas, Murray, Murphy, Elsevier)

Sato K, Yamane M, Yamaji N, Kanamori H, Tagiri A, Schwerdt JG, Fincher GB, Matsumoto T, Takeda K and Komatsuda T (2016) Alanine aminotransferase controls seed dormancy in barley. Nature Communications 7, 11625. 

Srivastava V, Weber JR, Malm E, Fouke BW and Bulone V (2016) Proteomic analysis of a poplar cell suspension culture suggests a major role of protein S-acylation in diverse cellular processes. Frontiers in Plant Science 7, 477.

Sun L, Warren FJ, Netzel G and Gidley MJ (2016) 3 or 3′-Galloyl substitution plays an important role in association of catechins and theaflavins with porcine pancreatic α-amylase: The kinetics of inhibition of α-amylase by tea polyphenols. Journal of Functional Foods 26, 144-156.

Suzuki T, Narciso JO, Zeng W, van de Meene A, Yasutomi M, Takemura S, Lampugnani ER, Doblin MS, Bacic A and Ishiguro S (2016) KNS4/UPEX1: A type II arabinogalactan β-(1, 3)-Galactosyltransferase required for pollen exine development. Plant Physiology 173(1), 183-205.

Tan HT, Corbin KR and Fincher GB (2016) Emerging Technologies for the Production of Renewable Liquid Transport Fuels from Biomass Sources Enriched in Plant Cell Walls. Frontiers in Plant Science 7, 1854.

van de Meene AM, Doblin MS and Bacic A (2016) The plant secretory pathway seen through the lens of the cell wall. Protoplasma 254(1), 75-94.

Wang T, McFarlane HE and Persson S (2016) The impact of abiotic factors on cellulose synthesis. Journal of Experimental Botany 67 (2), 543-552.

Warren FJ, Gidley MJ and Flanagan BM (2016) Infrared spectroscopy as a tool to characterise starch ordered structure—a joint FTIR–ATR, NMR, XRD and DSC study. Carbohydrate Polymer 139, 35-42.

Williams BA, Zhang D, Lisle AT, Mikkelsen D, McSweeney CS, Kang S, Bryden WL and Gidley MJ. Soluble arabinoxylan enhances large intestinal microbial health biomarkers in pigs fed a red meat–containing diet. Nutrition 32 (4), 491-497.

Wu P, Dhital S, Williams BA, Chen XD and Gidley MJ. Rheological and microstructural properties of porcine gastric digesta and diets containing pectin or mango powder. Carbohydrate polymers 148, 216-226.

Yakubov GE, Bonilla MR, Chen H, Doblin MS, Bacic A, Gidley M and Stokes JR (2017) Mapping Nano-scale Mechanical Heterogeneity of Primary Plant Cell Walls. Journal of Experimental Botany 67 (9), 2799-2816.

Yang W, Schuster C, Beahan CT, Charoensawan V, Peaucelle A, Bacic A, Doblin MS, Wightman R and Meyerowitz EM. Regulation of Meristem Morphogenesis by Cell Wall Synthases in Arabidopsis. Current Biology 26 (11), 1404-1415.

Zeng W, Ebert B, Parsons HT, Rautengarten C, Bacic A and Heazlewood JL (2016) Enrichment of Golgi membranes from Triticum aestivum (wheat) seedlings. In: The Isolation of Plant Organelles and Structures: Methods and Protocols, Methods in Molecular Biology, vol. 1511, N.L. Taylor & A.H. Millar (ed), Humana Press, New York 

Zeng W, Lampugnani ER, Picard KL, Song L, Wu A, Farion IM, Zhao J, Ford K, Doblin M and Bacic A (2016) Asparagus IRX9, IRX10 and IRX14A are essential for xylan biosynthesis in the Golgi apparatus of Asparagus. Plant Physiology 171 (1), 93-109.

Zhai H, Gunness P and Gidley MJ (2016) Effects of cereal soluble dietary fibres on lipolysis of P-nitrophenol laurate, a model lipid. Journal of Nutrition & Intermediary Metabolism 1, 46.

Zhang B, Selway N, Shelat KJ, Dhital S, Stokes JR and Gidley MJ (2016) Tribology of swollen starch granule suspensions from maize and potato. Carbohydrate Polymers 155, 128-135.

Zhang R, Tucker MR, Burton RA, Shirley NJ, Little A, Morris J, Houston K, Hedley PE, Waugh R and Fincher GB  (2016) The dynamics of transcript abundance during cellularisation of developing barley endosperm. Plant Physiology 170(3): 1549–1565.

Zhang Y, Nikolovski N, Sorieul M, Vellosillo T, McFarlane HE, Dupree R, Kesten C, Schneider R, Driemeier C, Lathe R, Lampugnani E, Yu X, Ivakov A, Doblin MS, Mortimer JC, Brown, Persson S and Dupree P.Golgi-localized STELLO proteins regulate the assembly and trafficking of cellulose synthase complexes in Arabidopsis. Nature Communications 7, 11656..

Zheng Z, Stanley R, Gidley MJ and Dhital S (2016) Structural properties and digestion of green banana flour as a functional ingredient in pasta. Food & Function 7(2), 771-780.


2016 Publications authored or co-authored by ARC CoE PCW personnel not attributed to the CoE

de Michele R, McFarlane HE, Parsons HT, Meents MJ, Lao J, González Fernández-Niño SM, Petzold CJ, Frommer WB, Samuels AL and Heazlewood JL (2016) Free-flow electrophoresis of plasma membrane vesicles enriched by two-phase partitioning enhances the quality of the proteome from Arabidopsis seedlings. Journal of Proteome Research 15, 900-913.

Ebert B, Rautengarten C and Heazlewood JL (2016) GDP-L-fucose transport in plants: the missing piece. Channels 11 (1), 8–10.

Endler A, Schneider R, Kesten C, Lampugnani ER and Persson S (2016) The cellulose synthase companion proteins act non-redundantly with CELLULOSE SYNTHASE INTERACTING1/POM2 and CELLULOSE SYNTHASE 6. Plant Signaling & Behavior 11 (4), e1135281.

Ferdous J, Sanchez‐Ferrero JC, Langridge P, Milne L, Chowdhury J, Brien C and Tricker PJ (2016) Differential expression of microRNAs and potential targets under drought stress in barley. Plant, Cell & Environment 40 (1),11-24.

Hansen SF, Ebert B, Rautengarten C and Heazlewood JL (2016) "Proteomic characterization of Golgi membranes enriched from Arabidopsis suspension cell cultures" in The Golgi complex, ed. W.J. Brown.  (New York: Humana Press) doi: 10.1007/978-1-4939-6463-5_8

Heazlewood JL, Jorrín-Novo JV, Agrawal GK, Mazzuca S and Lüthje S (2016) Editorial: International Plant Proteomics Organization (INPPO) World Congress 2014. Frontiers in Plant Science 7, 1190.

Hu S, Wu L, Persson S, Peng L, Feng S (2015) Sweet Sorghum and Miscanthus; Two Dedicated Bioenergy Crops for Biofuel Production in China. Journal of Integrative Agriculture DOI: 10.1016/S2095-3119(15)61181-9.

Huson MG, Church JS, Hillbrick LK, Woodhead AL, Sridhar M and Van De Meene AML (2016) Focused ion beam milling of carbon fibres. Materials Chemistry & Physics 168, 193-200.

Jian-Ying MA, Sun W, Koteyeva NK, Stutz SS, Gandin A, Smith-Moritz AM, Heazlewood JL and Cousins AB (2016) Influence of light and nitrogen availability on the photosynthetic efficiency in C4 plant Miscanthus × giganteus. Photosynthesis Research 131 (1), 1-13.

Kuang G, Bulone V and Tu Y (2016) Computational studies of the binding profile of phosphoinositide PtdIns (3,4,5) P3 with the pleckstrin homology domain of an oomycete cellulose synthase. Scientific Reports 6, 20555.

Kuang G, Liang L, Brown C, Wang Q, Bulone V and Tu Y (2016) Insight into the adsorption profiles of the Saprolegnia monoica chitin synthase MIT domain on POPA and POPC membranes by molecular dynamics simulation studies.  Physical Chemistry Chemical Physics 18 (7), 5281-5290.

Lao J, Smith-Moritz AM, Mortimer JC and Heazlewood JL (2016) "Enrichment of the plant cytosolic fraction" in The Isolation of Plant Organelles and Structures: Methods and Protocols, eds. N.L. Taylor & A.H. Millar. (New York: Humana Press) doi: 10.1007/978-1-4939-6533-5_17

Pang Z, Srivastava V, Liu X and Bulone V (2016) Quantitative proteomics links metabolic pathways to specific developmental stages of the plant pathogenic oomycete Phytophthora capsici. Molecular Plant Pathology 18 (3), 378–390.

Rautengarten C, Ebert B, Liu L, Stonebloom S, Smith-Moritz AM, Pauly M, Orellana A, Scheller HV and Heazlewood JL (2016) The Arabidopsis Golgi-localized GDP-L-fucose transporter is required for plant development. Nature Communications 7, 12119.

Shelden MC, Dias DA, Jayasinghe NS, Bacic A and Roessner U (2016) Root spatial metabolite profiling of two genotypes of barley (Hordeum vulgare L.) reveals differences in response to short-term salt stress. Journal of Experimental Botany 67 (12), 3731-3745.

Stonebloom S, Ebert B, Xiong G, Pattathil S, Birdseye D, Lao J, Pauly M, Hahn MG, Heazlewood JL and Scheller HV (2016) A DUF-246 family glycosyltransferase-like gene affects male fertility and the biosynthesis of pectic arabinogalactans. BMC Plant Biology 16, 90.

Wang T, McFarlane HE and Persson S (2016) The impact of abiotic factors on cellulose synthesis. Journal of Experimental Botany 67 (2), 543-552.

Xu D, Shi J, Rautengarten C, Yang L, Qian X, Uzair M, Zhu L, Luo Q, An G, Waßmann F, Schreiber L, Heazlewood JL, Scheller HV, Hu J, Zhang D and Liang W (2016) Defective Pollen Wall 2 (DPW2) encodes an acyl transferase required for rice pollen development. Plant Physiology 173 (1), 240-255.


2015 Publications attributed to the ARC Centre of Excellence in Plant Cell Walls

Aditya J, Lewis J, Shirley NJ, Tan H-T, Henderson M, Fincher GB, Burton RA, Mather DE and Tucker MR (2015) The dynamics of cereal cyst nematode infection differ between susceptible and resistant barley cultivars and lead to changes in (1,3;1,4)-β-glucan levels and HvCslF gene transcript abundance . New Phytologist 207, 135-147.

Azadi M, Nguyen AV, & Yakubov GE (2015). Attractive Forces between Hydrophobic Solid Surfaces Measured by AFM on the First Approach in Salt Solutions and in the Presence of Dissolved Gases. Langmuir 31(6), 1941-1949.

Betts NS, Fox GP, Kelly AM, Cruickshank AW, Lahnstein J, Henderson M, Jordan DR and Burton RA. (2015) Non-cellulosic cell wall polysaccharides are subject to genotype × environment effects in sorghum (Sorghum bicolor) grain. Journal of Cereal Science 63, 64-71.

Bonilla MR, Lopez-Sanchez P, Gidley MJ and Stokes JR (2016) Micromechanical model of biphasic biomaterials with internal adhesion: Application to nanocellulose hydrogel composites. Acta Biomaterialia 29, 49-160.

Boughton BA, Thinagaran D, Sarabia D, Bacic A, Roessner U (2015) Mass Spectrometry Imaging for Plant Biology: A Review, Phytochemistry Reviews 1-44.

Corbin KR, Byrt CS, Bauer S, DeBolt S, Chambers D, Holtum JAM, Karem G, Henderson M, Lahnstein J, Beahan CT, Bacic A, Fincher GB, Betts NS and Burton R (2015) Prospecting for energy-rich renewable raw materials: Agave leaf case study. PloS ONE 10(8), e0135382.

Corbin KR, Hsieh YSY, Betts NS, Byrt CS, Henderson M, Stork J, DeBolt S, Fincher GB and Burton RA (2015) Grape marc as a source of carbohydrates for bioethanol: chemical composition, pre-treatment and saccharification. Bioresource Technology 193, 76-83.

Cu S, Collins HM, Betts NS, March TJ, Janusz A, Stewart DC, Skadhauge B, Eglinton J, Kyriacou B, Little A, Burton RA and Fincher GB, (2015) Water uptake in barley grain: physiology, genetics and industrial applications. Plant Science 242, 260-269.

Dhital S, Gidley MJ, & Warren FJ. (2015). Inhibition of α-amylase activity by cellulose: Kinetic analysis and nutritional implications. Carbohydrate Polymers 123, 305-312.

Dhital S, Warren FJ, Butterworth PJ, Ellis PR, & Gidley MJ (2015). Mechanisms of Starch Digestion by α-amylase–structural Basis for Kinetic Properties. Critical Reviews in Food Science and Nutrition 57(5), 875-892.

Draeger C, Ndinyanka Fabrice T, Gineau E, Mouille G, Kuhn BM, Moller I, Abdou MT, Frey B, Pauly M, Bacic A, Ringli C. (2015) Arabidopsis leucine-rich repeat extensin (LRX) proteins modify cell wall composition and influence plant growth. BMC Plant Biology 15.1 155.

Emanuelle S, Doblin MS, Stapleton DI, Bacic A, Gooley PR (2015) Molecular Insights into the Enigmatic Metabolic Regulator, SnRK1. Trends in Plant Science 10.1016/j.tplants.2015.11.001.

Emanuelle S, Hossain MI, Moller IE, Pedersen HL, van de Meene AM, Doblin MS, Koay A, Oakhill JS, Scott JW, Willats WG, Kemp BE, Bacic A, Gooley PR, Stapleton DI., (2015) SnRK1 from Arabidopsis thalianais an atypical AMPK. Plant Journal 82 (2) 183-192.

Endler A, Kesten C, Schneider R, Zhang Y, Ivakov A, Froehlich A, Funke N, Persson S. (2015) A Mechanism for Sustained Cellulose Synthesis during Salt Stress. Cell ;162(6):1353-64.

Ermawar RA, Collins HM, Byrt CS, Betts NS, Henderson M, Shirley NJ, Schwerdt J, Lahnstein J, Fincher GB and Burton RA (2015) Distribution, structure and biosynthetic gene families of (1,3;1,4)-beta-glucan in Sorghum bicolor (L.) Moench. Journal of Integrative Plant Biology 57, 429-445.

Ermawar RA, Collins HM, Byrt CS, Henderson M, O'Donovan LA, Shirley NJ, Schwerdt J, Lahnstein J, Fincher GB and Burton RA (2015) Genetics and physiology of cell wall polysaccharides in the model C4 grass, Setaria viridis spp. BMC Plant Biology 15, 236.

Flanagan BM, Gidley MJ, & Warren FJ (2015). Rapid quantification of starch molecular order through multivariate modelling of 13 C CP/MAS NMR spectra. Chemical Communications, 51(80), 14856-14858.

Ford KL, Zeng W, Heazlewood JL and Bacic A (2015) Characterization of protein N-glycosylation by tandem mass spectrometry using complementary fragmentation techniques, Frontiers in Plant Science 6, 674.

Galletti R, Johnson K, Scofield S, San-Bento R, Watt AM, Murray J and Ingram G (2015) Defective Kernel 1 protein promotes and maintains plant epidermal differentiation. Development 142(11), 1978-1983.

Gibbins HL, Proctor GB, Yakubov GE, Wilson S, & Carpenter GH (2015). SIgA Binding to Mucosal Surfaces Is Mediated by Mucin-Mucin Interactions. PLOS ONE, 10(3), e0119677.

Gilbert,MS, Pantophlet AJ, Berends H, Pluschke AM, van den Borne JJ, Hendriks WH, ... & Gerrits, W. J. (2015). Fermentation in the Small Intestine Contributes Substantially to Intestinal Starch Disappearance in Calves. The Journal of Nutrition, jn208595.

Gornik SG, Marsa F, Cassin A, MacRae JI, Ramaprasad A, Rchiad Z, McConville MJ, Bacic A, McFadden GI, Pain A, Waller RF, (2015) Endosymbiosis undone: stepwise elimination of the plastid in the dinoflagellate Hematodinium sp. PNAS 112(18) 5767-5772.

Herve C, Simeon A, Jam M, Cassin A, Johnson KL, Salmean AA, Willats WGT, Doblin MS, Bacic A, Kloareg B (2015) Arabinogalactan proteins have deep roots in eukaryotes: identification of genes and epitopes in brown algae and their role in Fucus serratus embryo development. , New Phytologist 1209: 1428-1441.

Hill CB, Taylor JD, Edwards J, Mather D, Langridge P, Bacic A, Roessner U, (2015) Detection of QTL for metabolic and agronomic traits in wheat with adjustments for variation at genetic loci that affect plant phenology. Plant Science 233, 143-154.

Houston K, Burton RA, Sznajder B, Rafalski AJ, Dhugga KS, Mather DE, Taylor J, Steffenson BJ, Waugh R and Fincher GB (2015) A genome-wide association study for culm cellulose content in barley reveals candidate genes co-expressed with members of the CELLULOSE SYNTHASE A gene family. PLOS ONE (10.1371/journal.pone.0130890).

Hsieh YS, Zhang Q, Yap K, Shirley NJ, Lahnstein J, Nelson CJ, Burton RA, Millar AH, Bulone V and Fincher GB, 2015. The Genetics, Transcriptional Profiles and Catalytic Properties of the UDP-Arabinose Mutase Family from Barley. Biochemistry.

Johnson KL, Ramm S, Kappel C, Ward S, Levser O, Sakamoto T, Kurata T, Bevan MW, Lenhard M (2015) The tinkerbell (Tink) mutation identifies the dual-specificty MAPK phosphatase INDOLE-3-BUTYRIC ACID-RESPONSES (IBR5) as a novel regulator of organ size in Arabidopsis, PloS ONE 10(7):e0131103

Karp A, Artaxo Netto PE, Berndes G, Cantarella H, El-Lakany H, Moellwald Duque Estrada TE, Faaij A, Fincher GB, Huntley BJ, Ravindranath NH, Van Sluys M-A, Verdade LM, Youngs H (2015) Bioenergy and Sustainability: Bridging the Gaps (Ed. Souza GM, Victoria RL, Joly CA, Verdade LM) Chapter 5 Environmental and Climate Security pp 138-183.

Lin D, Lopez-Sanchez P and Gidley MJ, (2015). Binding of arabinan or galactan during cellulose synthesis is extensive and reversible. Carbohydrate Polymers 126, pp.108-121.

Lopez-Sanchez P, Cersosimo J, Wang D, Flanagan B, Stokes JR, & Gidley MJ (2014). Poroelastic Mechanical Effects of Hemicelluloses on Cellulosic Hydrogels under Compression. PloS ONE 10(3), e0122132-e0122132.

Lopez-Sanchez P, Schuster E, Wang D, Gidley MJ, & Strom A (2015). Diffusion of macromolecules in self-assembled cellulose/hemicellulose hydrogels. Soft Matter 11(20), 4002-4010.

Low DY, Williams BA, D'Arcy BR, Flanagan BM, Gidley MJ. (2015) In vitro fermentation of chewed mango and banana: particle size, starch and vascular fibre effects. Food & Function 6(8), 2464-2474.

Low, DY, D'Arcy, B, Gidley, MJ. (2015) Mastication effects on carotenoid bioaccessibility from mango fruit tissue, Food Research International (2015). 67, 238-246.

Malone JM, Morran S, Shirley N, Boutsalis P and Preston C. (2015) EPSPS gene amplification in glyphosate-resistant Bromus diandrus. Pest Management Science 72: 81-88.

Marcotuli I, Houston K, Waugh R, Fincher GB, Burton RA, Blanco A and Gadaleta A (2015) Genome wide association mapping for arabinoxylan content in a collection of tetraploid wheats. PloS ONE 10(7): e0132787.

Martínez-Sanz M, Gidley MJ, & Gilbert EP (2015). Application of X-ray and neutron small angle scattering techniques to study the hierarchical structure of plant cell walls: A review. Carbohydrate Polymers 125, 120-134.

Martínez-Sanz M, Lopez-Sanchez P, Gidley MJ, & Gilbert EP (2015). Evidence for differential interaction mechanism of plant cell wall matrix polysaccharides in hierarchically-structured bacterial cellulose. Cellulose 1-23.

Mikkelsen D, Flanagan BM, Wilson SM, Bacic A, & Gidley MJ (2015). Interactions of arabinoxylan and (1, 3)(1, 4)-β-glucan with cellulose networks. Biomacromolecules 16(4), 1232-1239.

Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, Ye Z, Miao C, Lin Z, Wang H, Zhou H, Yim WC, Priest HD, Zheng C, Woodhouse M, Edger PP, Guyot R, Guo HB, Guo H, Zheng G, Singh R, Sharma A, Min X, Zheng Y, Lee H, Gurtowski J, Sedlazeck FJ, Harkess A, McKain MR, Liao Z, Fang J, Liu J, Zhang X, Zhang Q, Hu W, Qin Y, Wang K, Chen L-Y, Shirley N, Lin Y-R, Liu L-Y, Hernandez AG, Wright CL, Bulone V et al (2015) The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics 47, 1435-1442.

Mok L, Wynne JW, Ford K, Shiell B, Bacic A, Michalski WP. (2015) Proteomic analysis of Pteropus alecto kidney cells in response to the viral mimic, Poly I: C. Proteome Science 2015 Nov 2;13(1):1.

Mönch S, Netzel M, Netzel G, Ott U, Frank T, & Rychlik M (2015). Folate bioavailability from foods rich in folates assessed in a short term human study using stable isotope dilution assays. Food & Function 6(1), 241-247.

Oehme D, Downton M, Doblin MS, Wagner J, Gidley MJ, Bacic A (2015) Gaining insight into cell wall cellulose macrofibril organisation by simulating microfibril adsorption, Cellulose, 22(6), 3501-3520.

Oehme DP, Downton MT, Doblin MS, Wagner J, Gidley MJ, Bacic A (2015) Unique aspects of the structure and dynamics of elementary iβ cellulose microfibrils revealed by computational simulations. Plant Physiology 168 (1) 3-17.

Padayachee A, Day L, Howell K, & Gidley MJ (2015). Complexity and Health Functionality of Plant Cell Wall Fibres from Fruits and Vegetables. Critical Reviews in Food Science and Nutrition 57:1, 59-81.

Phan ADT, Netzel G, Wang D, Flanagan BM, D’Arcy BR & Gidley MJ (2015). Binding of dietary polyphenols to cellulose: Structural and nutritional aspects. Food Chemistry 172, 388-396.

Pyke J, Callahan D, Kanokia K, Bowne, J, Sahani S, Tull D, Bacic A, McConville MJ, Roessner U (2015) A tandem liquid chromatography–mass spectrometry (LC–MS) method for profiling small molecules in complex samples. Metabolomics: 1-11.

Schwerdt JG, MacKenzie K, Wright F, Oehme D, Wagner JM, Harvey AJ, Shirley NJ, Burton RA, Schreiber M, Halpin C, Zimmer J, Marshall DF, Waugh R and Fincher GB (2015) Evolutionary dynamics of the cellulose synthase gene superfamily in grasses. Plant Physiology pp-00140.

Shelat KJ, Nicholson T, Flanagan BM, Zhang D, Williams BA, Gidley MJ (2015) “Rheology and microstructure characterisation of small intestinal digesta from pigs fed a red meat- containing Western-style diet” Food Hydrocolloids 2015, 44: 300-308.

Song L, Zeng W, Wu A, Picard K, Lampugnani ER, Cheetamun R, Beahan C, Cassin A, Lonsdale A, Doblin MS, Bacic A, (2015) Asparagus spears as a model to study heteroxylan biosynthesis during secondary wall development. PLoS One 10 (4) e0123878.

Tan H-T, Shirley NJ, Singh RR, Henderson M, Dhugga KS, Mayo GM, Fincher GB and Burton RA (2015) Powerful regulatory systems and post-transcriptional gene silencing resist increases in cellulose content in cell walls of barley. BMC Plant Biology 15, 62.

Tiong J, Mcdonald G, Genc Y, Shirley N, Langridge P and Huang CY (2015) Increased expression of six ZIP family genes by zinc (Zn) deficiency is associated with enhanced uptake and root-to-shoot translocation of Zn in barley (Hordeum vulgare). New Phytologist 207, 1097-1109.

Uboldi AD, McCoy JM, Blume M, Gerlic M, Ferguson DJ, Dagley LF, Beahan CT, Stapleton DI, Gooley PR, Bacic A, Masters SL. (2015) Regulation of Starch Stores by a Ca 2+-Dependent Protein Kinase Is Essential for Viable Cyst Development in Toxoplasma gondii. Cell Host & Microbe 2015 Dec 9; 18(6):670-81.

Wang D, Ho L, Faith J, Ono K, Janle EM, Lachcik PJ, Cooper BR, Jannasch AH, D’Arcy BR, Williams BA, Ferruzzi MG, Levine S, Zhao W, Dubner L, & Pasinetti, G. M. (2015). Role of intestinal microbiota in the generation of polyphenol‐derived phenolic acid mediated attenuation of Alzheimer's disease β‐amyloid oligomerization. Molecular Nutrition & Food Research Vol. 59, pp. 1025–1040.

Warren FJ, Zhang B, Waltzer G, Gidley MJ, & Dhital, S (2015). The interplay of α-amylase and amyloglucosidase activities on the digestion of starch in in vitro enzymic systems. Carbohydrate Polymers 117, 192-200.

Wijetunge CD, Saeed I, Boughton BA, Spraggins JM, Caprioli RM, Bacic A, Roessner U, Halgamuge SK. (2015) EXIMS: an improved data analysis pipeline based on a new peak picking method for EXploring Imaging Mass Spectrometry data. Bioinformatics: btv356.

Williams BA, Zhang D, Lisle AT, Mikkelsen D, McSweeney CS, Kang S, Bryden WL & Gidley MJ (2015). Soluble arabinoxylan enhances large intestinal microbial health biomarkers in pigs fed a red meat–containing diet. Nutrition 32(4) 491-497.

Wilson SM, Ho YY, Lampugnani ER,Van de Meene AML, Bain MP, Bacic A, Doblin MS , (2015) Determining the subcellular location of (1,3; 1,4)-β-D-glucan synthesis and assembly. Plant Cell 27(3) 754-771.

Wong SC, Shirley NJ, Little A, Khoo KHP, Schwerdt J, Fincher GB, Burton RA and Mather DE (2015) Differential expression of the HvCslF6 gene late in grain development may explain quantitative differences in (1,3;1,4)-β-glucan concentration in barley. Molecular Breeding 35(1), 1-12.

Würschum, T., Tucker, M. R., Maurer, H. P., & Leiser, W. L. (2015). Ethylene inhibitors improve efficiency of microspore embryogenesis in hexaploid triticale. Plant Cell, Tissue and Organ Culture (PCTOC), 122(3), 751-757.

Yakubov GE, Branfiled T, Bongaerts J, Stokes JR (2015) Tribology of particle suspensions in soft rolling-sliding contacts. Biotribology 3, 1-10.

Yakubov GE, Macakova L, Wilson S, Windust JH & Stokes JR (2015). Aqueous lubrication by fractionated salivary proteins: Synergistic interaction of mucin polymer brush with low molecular weight macromolecules. Tribology International 89, 34-45.

Yakubov GE, Zhong l, Li M, Boehm MW, Xie F, Beattie DA, Halley PJ, and Stokes JR. (2015) Lubrication of starch in Ionic liquid-water mixtures: soluble carbohydrate polymers form a boundary film on hydrophobic surfaces. Carbohydrate Polymers 133 (2015): 507-516.

Yamassaki FT, Lenzi RM, Campestrini LH, Bovo F, Seyfried M, Soldera-Silva A, Stevan-Hancke FR, Zawadzki-Baggio SF, Pettolino FA, Bacic A, Maurer JB, (2015) Effect of the native polysaccharide of cashew-nut tree gum exudate on murine peritoneal macrophage modulatory activities . Carbohydrate Polymers 125, 241-248.

Yu L, Xue C, Chang Y, Hu Y, Xu X, Ge L, & Liu G (2015). Structure and rheological characteristics of fucoidan from sea cucumber Apostichopus japonicus. Food Chemistry 180, 71-76.

Zhang B, Dhital S, & Gidley M J (2015). Densely packed matrices as rate determining features in starch hydrolysis. Trends in Food Science & Technology 43(1), 18-31.

Zhang B, Dhital S, Flanagan BM, Luckman P, Halley PJ, & Gidley MJ (2015). Extrusion induced low-order starch matrices: Enzymic hydrolysis and structure. Carbohydrate Polymers 134, 485-496.

Zhang D, Williams B, Mikkelsen D, Li X, Keates HL, Lisle AT, Collins HM, Fincher GB, Bird AR, Topping DL, Gidley MJ, Bryden WL (2014) Soluble arabinoxylan alters digesta flow and protein digestion of red meat-containing diets in pigs. Nutrition 31(9), 1141-1147.

2014 Publications attributed to the ARC Centre of Excellence in Plant Cell Walls

Athman A, Tanz S K, Conn VM, Jordans C, Mayo, GM, Ng WW, Burton RA, Conn SJ, and Gilliham M. (2014) Protocol: a fast and simple in situ PCR method for localising gene expression in plant tissue. Plant methods 10, no. 1 (2014): 1-20.

Boehm MW, Baier SK, Stokes JR (2013) Capturing changes in structure and rheology of an oily brittle snack food during in vitro oral processing. Food Research International, 54 (1) 544-551.

Boehm MW, Warren FJ, Moore JE, Baier SK, Gidley MJ, Stokes JR (2014) Influence of hydration and starch digestion on the transient rheology of an aqueous suspension of comminuted potato snack food. Food Funct. 5, 2775-2782 DOI: 10.1039/C4FO00573B.

Bonilla MR, Stokes JR, Gidley MJ, Yakubov GE (2014) Interpreting Atomic Force Microscopy nanoindentation of hierarchical biological materials using multi-regime analysis, 2014, Soft Matter, DOI: 10.1039/C4SM02440K.

Burton RA and Fincher GB (2014) Evolution and Development of Cell Walls in Cereal Grains. Frontiers In Plant Science 5: 456 doi: 10.3389/fpls.2014.00456.

Burton RA, Fincher GB (2014) Plant cell wall engineering: applications in biofuel production and improved human health. Current Opinions. Biotechnol, 26: 79-84.

Chowdhury J, Henderson M, Schweizer P, Burton RA, Fincher GB and Little A (2014) Differential accumulation of callose, arabinoxylans and cellulose in nonpenetrated versus penetrated papillae on leaves of barley infected with Blumeria graminis f. sp. Hordei, New Phytologist 204: 650-660. DOI: 10.1111/nph.12974

Comino P, Collins H, Lahnstein J, Beahan C, Gidley MJ (2014) Characterisation of soluble and insoluble cell wall fractions from rye, wheat and hull-less barley endosperm flours, Food Hydrocolloids, 41,219-226.

Coombe D, Davis C, Fincher G, McConville M, Packer N, Stubbs K, Williams S and Dell A (2013) Letter to the Glycoforum: Transforming glycoscience: An Australian perspective. Glycobiology, 24 (1): 1-3.

Dhital S, Butardo VM, Jobling SA, Gidley MJ. (2014). Rice starch granule amylolysis - differentiating effects of particle size, morphology, thermal properties and crystalline polymorph. Carbohydrate Polymers.

Dhital S, Dolan G, Stokes JR, Gidley MJ (2014) Enzymatic hydrolysis of starch in the presence of cereal soluble fibre polysaccharides. Food and Function 5(3) 579-586.

Dhital S, Warren FJ, Gidley, Butterworth, PJ, Ellis PR, Gidley, MJ. (2014). Mechanisms of starch digestion by a-amylase–structural basis for kinetic properties, Critical Reviews in Food Science and Nutrition. DOI 10.1080/10408390.2014.922043.

Dhital S, Warren FJ, Zhang B, Gidley MJ. (2014). Amylase binding to starch granules under hydrolysing and non-hydrolysing conditions, Carbohydrate Polymers, 113, 97-107.

Doblin MS, Johnson K, Humphries J, Newbigin EJ, Bacic A (2014). Are designer plant cell walls a realistic aspiration or will the plasticity of the plants metabolism win out? Current Opinion in Biotech – Plant Biotech 26: 108-114

Foroughi S, Baker AJ, Roessner U, Johnson AA, Bacic A, & Callahan DL. (2014). Hyperaccumulation of zinc by Noccaea caerulescens results in a cascade of stress responses and changes in the elemental profile. Metallomics, 6(9), 1671-1682.

Gibbins HL, Yakubov GE, Proctor GB, Wilson, Stephen and Carpenter, Guy H. (2014) What interactions drive the salivary mucosal pellicle formation?. Colloids and Surfaces B: Biointerfaces, 120: 184-192.

Houston K, Russell J, Washington J, Burton RA, Fincher GB, and Waugh R (2014) A genome wide association scan for (1, 3; 1, 4)-ß-glucan content in the grain of contemporary 2-row Spring and Winter barleys. BMC Genomics, 15(1), 907.

In Vitaliy V. Khutoryanskiy (Ed.), Mucoadhesive Materials and Drug Delivery Systems (pp. 197-232) Chichester, West Sussex, UK: John Wiley & Sons.

Khutoryanskiy (Ed.), Mucoadhesive Materials and Drug Delivery Systems (pp. 3-37) Chichester, West Sussex, UK: John Wiley & Sons.

Lee, J. E., Lampugnani, E. R., Bacic, A. and Golz, J. F. (2014), SEUSS and SEUSS-LIKE 2 coordinate auxin distribution and KNOXI activity during embryogenesis. The Plant Journal. doi: 10.1111/tpj.12625

Li E, Dhital S, & Hasjim J. (2014). Effects of grain milling on starch structures and flour/starch properties. Starch-Stärke, 66(1-2), 15-27.

Li L, Huang J, Qin L, Huang Y, Zeng W, Rao Y, Li J, Li X, Xu WL (2014) Two cotton fiber-associated glycosyltransferases, GhGT43A1 and GhGT43C1, function in hemicellulose glucuronoxylan biosynthesis during plant development. Physiologia Plantarum DOI: 10.1111/ppl.12190

Li M, Lopato S, Hrmova M, Pickering M, Shirley N, Koltunow AM, Langridge P (2014) Expression patterns and protein structure of a lipid transfer protein END1 from Arabidopsis. Planta. DOI 240,1319-1334.

Liu W, Maurer HP, Li G, Tucker MR, Gowda M, Weissmann EA, Hahn V, Würschum T (2014) Genetic architecture of winter hardiness and frost tolerance in triticale. PLoS One 9(6):e99848. doi:10.1371/journal.pone.0099848.

Lopez-Sanchez P, Rincon Bonilla M, Wang D, Brulhart S, Stokes J, Gidley M. (2014) Micromechanics and poroelasticity of hydrated cellulose networks, Biomacromolecules 15, 2274−2284.

Lorbeer AJ, Lahnstein J, Fincher GB, Su P, Zhang W (2014) Kinetics of conventional and microwave-assisted fucoidan extractions from the brown alga, Ecklonia radiatea. Journal of Applied Phycology, DOI 10.1007/s10811-014-0446-8.

Lowe RGT, Cassin A, Grandaubert J, Clark BL, Van de Wouw AP, et al. (2014) Genomes and Transcriptomes of Partners in Plant-Fungal-Interactions between Canola (Brassica napus) and Two Leptosphaeria Species. PLoS ONE 9(7): e103098. doi:10.1371/journal.pone.0103098

Martin AP, Palmer W, Byrt CS, Furbank RT and Grof CPL (2013) A holistic high-throughput screening framework for biofuel feedstock assessment that characterises variations in soluble sugars and cell wall composition in Sorghum bicolor. Biotechnology for biofuels 6.1: 1-13. (DOI 10.1186/1754-6834-6-186).

Mikkelsen MD, Harholt J, Ulvskov P, Johansen IE, Fangel JU, Doblin MS, Bacic A, Willats WGT (2014). Evidence for land plant cell wall biosynthetic mechanisms in charophyte green algae Annals of Botany doi:10.1093/aob/mcu171.

Paulsen B S, Craik D J, Dunstan DE, Stone B A, Bacic A (2014). The Yariv reagent: behavior in different solvents and interaction with a gum arabic Arabinogalactan-protein. Carbohydrate Polymers. (DOI: 10.1016/j.carbpol.2014.01.009) 106 460-468.

Ratnayake S, Beahan CT, Callahan DL, Bacic A (2014) The reducing end sequence of wheat endosperm cell wall arabinoxylans. Carbohydrate Research 386, pp. 23-32 (DOI:10.1016/j.carres.2013.12.013).

Schreiber M, Wright F, MacKenzie K, Hedley PE, Schwerdt JG, Little A, Burton RA, Fincher GB, Marshall D, Waugh R, Halpin C. (2014). The barley genome sequence assembly reveals three additional members of the CslF (1, 3; 1, 4)-ß-Glucan Synthase Gene Family. PloS One, 9(3), e90888.

Selway N, Stokes JR (2014) 'Soft material deformation, flow, and lubrication between compliant substrates: Impact on flow, behavior, mouthfeel, stability, and flavor'. Annual Review of Food Science and Technology, Vol. 5, 373-393.

Trafford K and Fincher GB. (2014) Barley Grain Carbohydrates: Starch and Cell Walls. In: Barley Chemistry and Technology, 2nd Edition, PR Shewry and S Ullrich (editors), AACC Monograph Series, pp 71-95.

Tucker MR & Koltunow AM (2014). Traffic monitors at the cell periphery: the role of cell walls during early female reproductive cell differentiation in plants. Current Opinion in Plant Biology, 17, 137-145.

Warren FJ, Waltzer G, Zhang B, Gidley MJ, Dhital S (2014). The interplay of alpha-amylase and amyloglucosidase activities on the digestion of starch in in vitro enzymic systems. Carbohydrate Polymers,

Yakubov GE, Macakova L, Wilson S, Windust JHC, Stokes JR (2014) Aqueous lubrication by fractionated salivary proteins: Synergistic interaction of mucin polymer brush with low molecular weight macromolecules, Tribology International, DOI: 10.1016/j.triboint.2014.12.025

Yakubov, G E (2014). Lubrication. In Antoon J. M. Ligtenberg and Enno C. I. Veerman (Ed.), Saliva: secretion and functions (pp. 71-87) Basel, Switzerland: S. Karger.

Yakubov, GE, Gibbins, H, Proctor, GB and Carpenter, Guy H (2014). Oral mucosa: physiological and physicochemical aspects. In Vitaliy V.

Yakubov, GE., Singleton, Scott and Williamson, A (2014). Methods for assessing mucoadhesion: the experience of an integrative approach.

Zhang Q, Cheetamun R, Dhugga KS, Rafalski JA, Tingey SV, Shirley NJ, Taylor J, Hayes K, Beatty M, Bacic A, Burton RA and Fincher GB. (2014) Spatial gradients in cell wall composition and transcriptional profiles along elongating maize internodes. BMC Plant Biology 14: 27.

Zhao X, Ouyang K, Gan S, Zeng W, Song L, Zhao S, Li J, Doblin MS, Bacic A, Chen X-Y, Marchant A, Deng X and Wu A-M (2014) Biochemical and molecular changes associated with heteroxylan biosynthesis in Neolamarckia cadamba (Rubiaceae) during xylogenesis. Frontiers Plant Science 5:602. doi:10.3389/fpls.2014.00602.

2013 Publications attributed to the ARC Centre of Excellence in Plant Cell Walls

Ashton L,Pudney PDA, Blanch EW, Yakubov GE. (2013) Understanding glycoprotein behaviours using Raman and Raman optical activity spectroscopies: Characterising the entanglement induced conformational changes in oligosaccharide chains of mucin. Advances in Colloid and Interface Science, DOI: 10.1016/j.cis.2013.06.005.

Boehm MW, Baier SK, Stokes JR. (2013) Capturing changes in structure and rheology of an oily brittle snack food during in vitro oral processing. International Food Journal, 54 (1), 423-431.

Burton RA, Fincher GB. (2014) Plant Cell Wall Engineering: Applications in Biofuel Production and Improved Human Health. Current Opinion in Biotechnology, 26, April 2014, Pages 79-84 9.0 3

Byrt CS, Betts NS, Farrohki N and Burton RA. (2013) Deconstructing plant biomass: cell wall structure and novel manipulation strategies. In: BP Singh , ed. Biofuel Crops: Production, Physiology and Genetics. Wallingford: CABI. Ch. 7.

Comino P, Collins HM, Lahnstein J and Gidley MJ. (2013) Separation and Purification of Soluble Polymers and Cell Wall Fractions from Wheat, Rye and Hull less Barley Endosperm Flours for Structure-Nutrition Studies. Journal of Agricultural and Food Chemistry, 61, 12111−12122.

Dawei L, Ford K, Roessner U, Natera S, Cassin AM, Patterson J, Bacic A. (2013) Rice Suspension Cultured Cells are Evaluated as a Model System to Study Salt Responsive Networks in Plants using a Combined Proteomic and Metabolomic Profiling approach. Proteomics 13 (12-13) 2046-2062 Special issue ‘Plant proteomics in crop improvement'.

Dhital S, Lin AHM, Hamaker BR, Gidley MJ, Muniandy, A. (2013) Mammalian mucosal α-glucosidases coordinate with α-amylase in the initial starch hydrolysis stage to have a role in starch digestion beyond glucogenesis. PloS One 8 (4), e62546.

Dhital S, Shelat K, Shrestha AK and Gidley MJ. (2013) Heterogeneity in maize starch granule internal architecture deduced from diffusion of fluorescent dextran probes. Carbohydrate Polymers 93:365–373.

Eini O, Yang N, Pyvovarenko T, Pillman K, Bazanova N, Tikhomirov N, Eliby S, Shirley N, Sivasankar S, Tingey S, Langridge P, Hrmova M, Lopato S (2013) Complex regulation by Apetala2 domain-containing transcription factors revealed through analysis of the stress-responsive TdCor410b promoter from durum wheat. PLoS ONE 8, e58713.

Fredericks CH, Fanning KJ, Gidley MJ, Netzel G, Zabaras D, Herringtone M and Netzel M. (2013) High-anthocyanin strawberries through cultivar selection. Journal of the Science of Food Agriculture, 93: 846–852.

Gibbins HL, Proctor GB, Yakubov GE, Wilson S, Carpenter GH. (2013) Concentration of salivary protective proteins within the bound oral mucosal pellicle. Oral Deseases, DOI: 10.1111/odi.12194.

Gidley MJ (2013) Hydrocolloids in the digestive tract and related health implications, Current Opinion in Colloid & Interface Science 18, 371–378.

Hasjim J, Li E and Dhital S. (2013) Effects of grain milling on starch structures and flour/starch properties. Starch/Stärke, 66, 15-27 DOI:10.1002/star.201200224.

Hasjim J, Li E and Dhital S. (2013) Milling of rice grains. Effects of starch/flour structures on gelatinization and pasting properties. Carbohydrate Polymers 92:682–690.

Hill CB, Taylor JD, Edwards J, Mather D, Bacic A, Langridge P, Roessner U. (2013) Whole genome mapping of agronomic and metabolic traits to identify novel quantitative trait loci in bread wheat (Triticum aestivum L.) grown in a water-limited environment. Plant Physiology, 162: 1266-1281.

Johnston S, Prakash R, Chen NJ, Kumagai MH, Turano HM, Cooney JM, Atkinson RG, Paull RE, Cheetamun R, Bacic A, Brummell DA and Schroeder R. (2013) An enzyme activity capable of endotransglycosylation of heteroxylan polysaccharides is present in plant primary cell walls.Planta, 237: 173-187.

Lampugnani E, Moller I, Cassin A, Jones DF, Koh PL, Ratnayake S, Beahan CT, Wilson SM, Bacic A, Newbigin E. (2013) In vitro grown pollen tubes of Nicotiana alata actively synthesise a fucosylated xyloglucan. PLoS ONE, 8 (10): e77140. doi:10.1371/journal.pone.0077140.

Liu W, Maurer HP, Reif JC, Melchinger AE, Utz HF, Tucker MR, Ranc N, Della Porta G and Würschum T. (2013) Optimum design of family structure and allocation of resources in association mapping with lines from multiple crosses. Heredity 110:71-79.

Milne RJ, Byrt CS, Patrick JW and Grof CPL (2013) Are sucrose transporter expression profiles linked with patterns of biomass partitioning in Sorghum phenotypes? Frontiers in Plant Science 4:223. DOI: 10.3389/fpls.2013.00223.

Moore KL, Chen Y, van de Meene AML, Hughes L, Liu W, Geraki T, Mosselmans F, McGrath SP, Grovenor C and Zhao, F-J (2014) Combined NanoSIMS and synchrotron X-ray fluorescence reveal distinct cellular and subcellular distribution patterns of trace elements in rice tissues. New Phytologist 201: 104-115. DOI: 10.1111/nph.12497.

Okada T, Hu Y, Tucker MR, Taylor JM, Johnson SD, Spriggs A, Tsuchiya T, Oelkers K, Rodrigues JCM, Koltunow AMG (2013) Enlarging cells initiating apomixis in Hieracium praealtum transition to an embryo sac program prior to entering mitosis. Plant Physiology. 163 (1):216-31. DOI:10.1104/pp.113.219485.

Padayachee A, Netzel G, Netzel M, Day L, Mikkelsen D and Gidley MJ. (2013) Lack of release of bound anthocyanins and phenolic acids from carrot plant cell walls and model composites during simulated gastric and small intestinal digestion. Food Function, 4 906-916.

Selway N, Stokes JR. (2013) Insights into the dynamics of oral lubrication and mouthfeel using soft tribology: differentiating semi-fluid foods with similar rheology. International Food Journal, 54 (1) 423-431.

Shelden MC, Roessner U, Sharp RE, Tester M and Bacic A. (2012) Genetic variation in the root growth response of barley cultivars to salinity stress. Functional Plant Biology

Stokes JR, Boehme MW, Baier S. (2013) Oral processing, Texture and Mouthfeel: from rheology to tribology and beyond. Current Opinion in Colloid & Interface Science 18 349–359.

Trafford K, Haleux P, Henderson M, Parker M, Shirley NJ, Tucker MR, Fincher GB, Burton RA. (2013) Grain development in Brachypodium and other grasses: possible interactions between cell expansion, starch deposition, and cell-wall synthesis. Journal of Experimental Botany, DOI:10.1093/jxb/ert292.

Tucker MR,and Koltunow AMG. (2013) Traffic monitors at the cell periphery: the role of cell walls during early female reproductive cell differentiation in plants. Current Opinion in Plant Biology, DOI 10.1016/j.pbi.2013.11.015.

Van Sluyter S, Warnock N, Schmidt S, Anderson P, Van Kan JAL, Bacic A, Waters E (2013) An aspartic acid protease from Botrytis cinerea removes haze forming proteins during white winemaking. Journal of Agricultural and Food Chemistry, 61 (40), pp 9705–9711 DOI: 10.1021/jf402762k.

Wijetunge CD, Li Z, Saeed I, Bowne J, Hsu AL, Roessner U, Bacic A, Halgamuge SK (2013) Exploratory analysis of high-throughput metabolomics data. Metabolomics 9:1311–1320 DOI 10.1007/s11306-013-0545-6.

Würschum T, Tucker MR and Maurer HP. (2013) Stress treatments influence efficiency of microspore embryogenesis and green plant regeneration in hexaploid triticale (x Tritosecale Wittmack L.) In Vitro Cellular and Developmental Biology - Plant, DOI: 10.1007/s11627-013-9539-3.

Zhang B, Dhital S, Gidley MJ. (2013) Synergistic and antagonistic effects of alpha-amylase and amyloglucosidase on starch digestion. Biomacromolecules, 14, 1945-1954.

2012 Publications attributed to the ARC Centre of Excellence in Plant Cell Walls

Mayer KFX, Waugh R, Langridge P, Close TJ, Wise RP, Graner A, Matsumoto T, Sato K, Schulman A, Muehlbauer GJ, Ariyadasa R, Schulte D, Poursarebani N, Zhou R, Steuernagel B, Mascher M, Scholz U, Shi B,Madishetty K, Svensson JT, Bhat P, Moscou M, Resnik J, Hedley P, Liu H, Morris J, Frenkel Z, Korol A, Bergès H, Taudien S, Felder M, Groth M, Platzer M, Himmelbach A, Lonardi1 S, Duma D, Alpert M, Cordero F, Beccuti M, Ciardo G, Ma1 Y, Wanamaker S, Cattonaro F, Vendramin V, Scalabrin S, Radovic S, Wing R, Morgante M, Nussbaumer T, Gundlach H, Martis M, Ariyadasa R, Poland J, Spannagl M, Pfeifer M, Gundlach H, Gundlach H, Moisy C, Tanskanen J, Scalabrin1 S, Zuccolo1 A, Vendramin V, Russell J, Druka A, Marshall D, Bayer M, Swarbreck D, Sampath D, Ayling S, Febrer M, Caccamo M, Tanaka T, Schmutzer T, Bayer M, Brown JWS, Fincher GB and Stein N. (2012) A physical, genetic and functional sequence assembly of the barley genome. Nature 491: 711–716.

Munns R, James RA, Xu B, Athman A, Conn SJ, Jordans C, Byrt CS, Hare RA, Tyerman SD, Tester M, Plett D and Gilliham M. (2012) Wheat grain yield on saline soils is improved by an ancestral Na+ transporter gene. Nature Biotechnology, 30: 360–366.

Gornik SG, Ford KL, Mulhern TD, Bacic A, McFadden GI and Waller R. (2012) Loss of nucleosomal DNA condensation coincides with appearances of a novel nuclear protein in dinoflagellates. Current Biology 22: 1–10.

Pettolino FA, Walsh C, Fincher GB and Bacic A. (2012) Determining the polysaccharide composition of plant cell walls. Nature Protocols 7: 1590–1607.

Wilson SM and Bacic A. (2012) Preparation of plant cells for transmission electron microscopy to optimise immunogold labelling of carbohydrate and protein epitopes. Nature Protocols 9: 1716–1727.

Wilson SM, Burton RA, Collins HM, Doblin MS, Pettolino FA, Shirley N, Fincher FB and Bacic A. (2012) Pattern of deposition of cell wall polysaccharides and transcript abundance of related cell wall synthesis genes during differentiation in barley (Hordeum vulgare) endosperm. Plant Physiology 159:655–670.

Tucker MR, Okada T, Hu Y, Scholefield A, Taylor JM and Koltunow AM. (2012) Somatic small RNA pathways promote the mitotic events of megagametogenesis during female reproductive development in Arabidopsis. Development 139:1399–1404.

Lee JD, Dekkers BJW, Steinbrecher T, Walsh CT, Bacic A, Bentsink L, Leubner-Metzger G and Knox JP. (2012) Distinct cell wall architecture in seed endosperm in representatives of the Brassicaceae and Solanaceae. Plant Physiology 160: 1551–1566.

Tucker MR, Okada T, Johnson SD, Takaiwa F and Koltunow AM. (2012) Sporophytic ovule tissues modulate the initiation and progression of apomixis in Hieracium. Journal of Experimental Botany 63:3229–3241.

Alheit KV, Maurer HP, Reif JC, Tucker MR, Hahn V, Weissmann EA andWuerschum T. (2012) Genome-wide evaluation of genetic diversity and linkage disequilibrium in winter and spring triticale (×Triticosecale Wittmack). BMC Genomics

Padayachee A, Netzel G, NetzelM,Day L, Zabaras D, Mikkelsen D and Gidley MJ. (2012) Binding of polyphenols to plant cell wall analogues – Part 1: Anthocyanins. Food Chemistry 134:155–161.

Padayachee A, Netzel G, NetzelM,Day L, Zabaras D, Mikkelsen D and Gidley MJ. (2012) Binding of polyphenols to plant cell wall analogues – Part 2: Phenolic acids. Food Chemistry 135:2287–2292.

Gunness P, Flanagan BM, Shelat K, Gilbert RG and Gidley MJ.(2012) Kinetic analysis of bile salt passage across a dialysis membrane in the presence of cereal soluble dietary fibre polymers. Food Chemistry 134:2007–2013.

Buchanan M, Burton RA, Dhugga KS, Rafalski JA, Tingey SV, Shirley NJ and Fincher GB. (2012) Endo-(1,4)-ßglucanase gene families in the grasses: temporal and spatial co-transcription of orthologous genes. BMC Plant Biology 12:235 doi:10.1186/1471-2229-12-235.

Würschum T, Tucker MR, Reif JC and Maurer HP. (2012) Improved efficiency of doubled haploid generation in hexaploid triticale by in vitro chromosome doubling. BMC Plant Biology 12:109 2229/12/109.

Zhao Y, Chen L, Yakubov G, Aminiafshar T, Han L and Lian G (2012) Experimental and theoretical studies on the binding of epigallocatechingallate to purified porcine gastric mucin. Journal of Physical Chemistry 116:13010–13016.

Shrestha AK, Blazek J, Flanagan BM, Dhital S, Larroque O, Morell MK, Gilbert EP and Gidley MJ. (2012) Molecular, mesoscopic and microscopic structure evolution during amylase digestion of maize starch granules. Carbohydrate Polymers 90:23–33.

Zhang B, Dhital S, Haque E and Gidley M.J. (2012) Preparation and characterization of gelatinised granular starches from aqueous ethanol treatments. Carbohydrate Polymers 90:1587–1594.

Mavroudis NE, Gidley MJ and Sjöholm I. (2012) Osmotic processing: effects of osmotic medium composition on the kinetics and texture of apple tissue. Food Research International 48:839–847.

O'Callaghan S, De Souza DP, Isaac A, Wang Q, Hodkinson L, Olshansky M, Erwin T, Appelbe B, Tull DJ, Roessner U, Bacic A, McConville MJ and Likić VA. (2012) PyMS: a Python toolkit for processing of gas chromatography—mass spectrometry (GC-MS) data. Application and comparative study of selected tools. BMC Bioinformatics 13:115doi:10.1186/1471- 2105-13-115.

Bindon KA, Bacic A and Kennedy JA. (2012) Tissuespecific and developmental modifications of grape cell walls influence the adsorption of proanthocyanidins. Journal of Agricultural and Food Chemistry 60:9249–9260.

Day L, Gomez J, Oiseth SK, Gidley MJ and Williams BA. (2012) Faster fermentation of cooked carrot cell clusters compared to cell wall fragments in vitro by porcine feces. Journal of Agricultural and Food Chemistry 60: 3282–3290.

Al-Rabadi GJ, Torley PJ, Williams BA, Bryden WL and Gidley MJ. (2012) Particle size heterogeneity in milled barley and sorghum grains: effects on physico-chemical properties and starch digestibility. Journal of Cereal Science 56:396–403.

Ling NXY, Lee J, Ellis M, Liao ML, Mau SL, Guest D, Janssen PH, Kovac P, Bacic A and Pettolino FA. (2012) An exo-ß-1,3- D-galactanase from Streptomyces sp. provides insights into type II arabinogalactan structure. Carbohydrate Research 352:70–81.

Hill CB, Jha D, Bacic A, Tester M and Roessner U. (2012) Characterization of ion contents and metabolomic responses to salt stress of different Arabidopsis thaliana AtHKT1;1 genotypes and their parental strains. Molecular Plant doi:10.1093/mp/sss125.

Moller IE, Pettolino FA, Hart C, Lampugnani ER, Willats WG and Bacic A. (2012) Glycan profiling of plant cell wall polymers using microarrays. Journal of Visualized Experiments 70:e4238, doi:10.3791/4238 .

Tan L, Showalter AM, Egelund J, Hernandez-Sanchez A, Doblin MS and Bacic A. (2012) Arabinogalactan-proteins and the research challenges for these enigmatic plant cell surface proteoglycans. Frontiers in Plant Physiology 3:1–10.

Burton RA and Fincher GB. (2012) Current challenges in cell wall biology in the cereals and grasses. Frontiers in Plant Science. 3:130. doi: 10.3389/fpls.2012.00130.


"2012 Publications from Centre personnel, notattributed to the ARC Centre"

Harris DM, Corbin K, Wang T, Gutierrez R, Bertolo AL, Petti C, Smilgies DM, Estevez JM, Bonetta D and Urbanowicz BR. (2012) Cellulose microfibril crystallinity is reduced by mutating C-terminal transmembrane region residues CESA1A903V and CESA3T942I of cellulose synthase. Proceedings of the National Academy of Sciences 109:4098–4103.

Laidlaw HKC, Lahnstein J, Burton RA, Fincher GB and Jobling SA. (2012) Analysis of the arabinoxylan arabinofuranohydrolase gene family in barley does not support their involvement in the remodelling of endosperm cell walls during development. Journal of Experimental Botany 63:3031–3045.

Kovalchuck N, Smith J, Bazanova N, Pyvovarenko T, Singh R, Shirley N, Ismagul A, Johnson A, Milligan AS, Hrmova M, Langridge P and Lopato S. (2012) Characterization of the grain-specific lipid transfer protein TdPR61from wheat, and its promoter activity in wheat, barley and rice. Journal of Experimental Botany, 63:2025–2040.

Wang J, Andersson-Gunnerås S, Gaboreanu I, Hertzberg M, Tucker MR, Zheng B, Leśniewska J, Mellerowicz EJ, Laux T, Sandberg G and Jones B. (2011) Reduced expression of the SHORT-ROOT gene increases the rates of growth and development in hybrid Poplar and Arabidopsis. PLoS One 6:e28878. (not included in 2011 Report)

Cotsaftis O, Plett D, Shirley N, Tester M and Hrmova M. (2012) A two-staged model of Na+ exclusion in rice explained by 3D modeling of HKT transporters and alternative splicing. PLoS One 7:e39865.

Haque E, Whittaker AK, Gidley MJ, Deeth HC, Fibrianto K and Bhandari BR. (2012) Kinetics of enthalpy relaxation of milk protein concentrate powder upon ageing and its effect on solubility. Food Chemistry 134:1368–1373.

Huynh B, Mather DE, Schreiber AW, Toubia J, Baumann U, Shoaei Z, Stein N, Stangoulis J, Edwards J, Shirley N, Langridge P and Fleury D. (2012) Clusters of genes encoding fructan biosynthesizing enzymes in wheat and barley. Plant Molecular Biology 80:299–314.

Regina A, Blazek J, Gilbert E, Flanagan BM, Gidley MJ, Cavanagh C, Larroque O, Li Z and Morell MK. (2012) Differential effects on starch structure and functionality of genetically distinct mechanisms of increasing amylose content in barley. Carbohydrate Polymers 89:979–991.

Kohli A, Narciso JO, Miro B and Raorane M. (2012) Root proteases: reinforced links between nitrogen uptake and mobilization and drought tolerance. Physiologia Plantarum 145:165–179.

Hasjim J, Li E. and Dhital S. (2012). Milling of rice grains. The roles of starch structures in the solubility and swelling properties of rice flour. Starch/Stärke 64:631–645.

Shrestha AK, Arcot J, Dhital S and Crennan S. (2012) Effect of biscuit baking conditions on the stability of microencapsulated 5-methyltetrahydrofolic acid and their physical properties. Food and Nutrition Sciences 3:1445– 1452.

2011 Publications attributed to the ARC Centre of Excellence in Plant Cell Walls

Al-Rabadi GJ, Torley PJ, Williams BA, Bryden WL, Gidley MJ (2011) Effect of extrusion temperature and pre-extrusion particle size on starch digestion kinetics in barley and sorghum grain extrudates, Animal Feed Science and Technology, 168:267-279.

Al-Rabadi GJ, Torley PJ, Williams BA, Bryden WL, Gidley MJ (2011) Particle size of milled barley and sorghum and physico-chemical properties of grain following extrusion, J Food Eng, 103:464-472.

Bowne J, Bacic A, Tester M, Roessner U (2011) Abiotic stress and metabolomics. Annual Plant Reviews, Volume 43, Biology of Plant Metabolomics, Ch 3, Robert Hall (ed) WileyBlackwell Publishing, 43:61-86.

Burton RA, Collins HM, Kibble NAJ, Smith JA, Shirley NJ, Jobling SA, Henderson M, Singh RR, Pettolino FA, Wilson SM, Bird AR, Topping DL, Bacic A, Fincher GB (2011) Overexpression of specific HvCsIF cellulose synthase-like genes in transgenic barley increases the levels of cell wall (1,3;1,4)-beta-D-glucans and alters their fine structure, Plant Biotechnology Journal, 9:117-135.

Conn SJ, Gilliham M, Athman A, Schreiber AW, Baumann U, Moller I, Cheng N-H, Stancombe MA, Hirschi KD, Webb AAR, Burton R, Kaiser BN, Tyerman SD and Leigh RA. (2011). Plant Cell. (2011) Cell-Specific Vacuolar Calcium Storage Mediated by CAX1 Regulates Apoplastic Calcium Concentration, Gas Exchange, and Plant Productivity in Arabidopsis. Plant Cell, 23:240-257.

Dhital S, Shrestha AK, Flanagan BN, Hasjim J, Gidley MJ (2011) Cryo-milling of starch granules leads to differential effects on molecular size and conformation, Carbohydrate Polymers, 84:1133-1140.

Dhital S, Shrestha AK, Hasjim J, Gidley MJ (2011) Physicochemical and Structural Properties of Maize and Potato Starches as a Function of Granule Size, Journal of Agricultural and Food Chemistry, 59:10151-10161.

Egelund J, Ellis M, Doblin MS, Qu Y, Bacic A (2011) Genes and Enzymes of the GT31 Family: Towards Unravelling the Function(s) of the Plant Glycosyltransferase Family Members, Annual Plant Reviews series “Plant polysaccharides: biosynthesis and bioengineering”, 41:213-234.

Drew DP, Hrmova M, Lunde C, Jacobs A, Tester M and Fincher GB (2011) Structural and functional analyses of PpENA1 provide insights into cation binding by type IID P-type ATPases in lower plants and fungi, Biochim Biophys Acta - Biomembranes, 1808:1483-92.

Gould SB, Kraft LGK, van Dooren G, Goodman CD, Ford K, Cassin A, Bacic A, McFadden GI, Waller RF (2011) Ciliate pellicular proteome identifies novel protein families with characteristic repeat motifs that are common to Alveolates. , Molecular Biology & Evolution , 28:1319-1331.

Huson MF, Strounina EV, Kealley CS, Rout MK, Church JS, Appelqvist IAM, Gidley MJ, Gilbert EP (2011) Effects of Thermal Denaturation on the Solid-State Structure and Molecular Mobility of Glycinin, Biomacromolecules, 12:2092- 2102.

Jacobs A., Ford K., Kretschmer J., and Tester M. (2011) Rice plants expressing the moss sodium pumping ATPase PpENA1 maintain greater biomass production under salt stress, Plant Biotechnology Journal, 9:838-847.

Moller IE, De Fine Licht HH, Harholt J, Willats WGT and Boomsma JJ. (2011) The dynamics of plant cell-wall polysaccharide decomposition in leaf-cutting ant fungus gardens. , PLoS ONE, 6(3):e1750.

Pudney PD, Gambelli L, Gidley MJ (2011) Confocal Raman Microspectroscopic Study of the Molecular Status of Carotenoids in Tomato Fruits and Foods, Applied Spectroscopy, 65:127-134.

Prabasari I, Pettolino P, Liao M-L, Bacic A (2011) Pectic polysaccharides from mature orange (Citrus sinensis) fruit albedo cell walls: Sequential extraction and chemical characterization., Carbohydrate Polymers , 84:484-494.

Sabboh-Jourdan H, Valla F, Eprilati I, Gidley MJ (2011) Organic acid bioavailability from banana and sweet potato using an in vitro digestion and Caco-2 cell model, European Journal of Nutrition, 50:31-40.

Shelat KJ, Vilaplana F, Nicholson TM, Gidley MJ, Gilbert RG (2011) Diffusion and rheology characteristics of barley mixed linkage -glucan and possible implications for digestion, Carbohydrate polymers, 86:1732-1738.

Waramboi JG, Dennien S, Gidley MJ, Sopade PA (2011) Characterisation of sweetpotato from Papua New Guinea and Australia: Physicochemical, pasting and gelatinisation properties, Food chemistry, 126:1759-1770.

Williams BA, Mikkelsen D, le Paih L, Gidley MJ (2011) In vitro fermentation kinetics and end-products of cereal arabinoxylans and (1,3;1,4)-beta-glucans by porcine faeces, Journal of Cereal Science, 53:53-58.